Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3308740-3509408

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Gm12592 11 3305426 to 3331178 25752 - unclassified non-coding RNA gene predicted gene 12592
Gm11944 11 3309000 to 3320722 11722 + lncRNA gene predicted gene 11944
Tssr100037 11 3310056 to 3310061 5 + TSS region transcription start site region 100037
Tssr100038 11 3311032 to 3311059 27 + TSS region transcription start site region 100038
D11Dcr1 11 3315493 to 3315591 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 1
Pik3ip1 11 3330401 to 3342971 12570 + protein coding gene phosphoinositide-3-kinase interacting protein 1
Tssr100039 11 3330521 to 3330541 20 + TSS region transcription start site region 100039
Tssr100040 11 3330668 to 3330694 26 + TSS region transcription start site region 100040
Tssr100041 11 3330740 to 3330749 9 + TSS region transcription start site region 100041
Tssr3405 11 3330754 to 3330759 5 + TSS region transcription start site region 3405
Tssr100042 11 3330777 to 3330780 3 + TSS region transcription start site region 100042
Tssr100043 11 3330781 to 3330812 31 + TSS region transcription start site region 100043
Tssr100044 11 3330816 to 3330830 14 + TSS region transcription start site region 100044
Tssr100045 11 3330832 to 3330843 11 + TSS region transcription start site region 100045
Tssr100046 11 3330879 to 3330912 33 + TSS region transcription start site region 100046
Tssr100047 11 3330916 to 3330934 18 + TSS region transcription start site region 100047
Tssr100048 11 3330946 to 3330961 15 + TSS region transcription start site region 100048
Tssr106459 11 3331180 to 3331201 21 - TSS region transcription start site region 106459
Cpgi2477 11 3331772 to 3332720 948 CpG island CpG island 2477
Tssr106460 11 3332253 to 3332276 23 - TSS region transcription start site region 106460
Tssr106461 11 3332277 to 3332301 24 - TSS region transcription start site region 106461
Tssr100049 11 3332426 to 3332460 34 + TSS region transcription start site region 100049
Tssr100050 11 3332461 to 3332484 23 + TSS region transcription start site region 100050
Tssr3406 11 3332485 to 3332488 3 + TSS region transcription start site region 3406
Tssr100051 11 3332494 to 3332511 17 + TSS region transcription start site region 100051
Tssr106462 11 3334248 to 3334259 11 - TSS region transcription start site region 106462
Tssr106463 11 3335812 to 3335836 24 - TSS region transcription start site region 106463
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr106464 11 3348681 to 3348696 15 - TSS region transcription start site region 106464
Tssr3407 11 3353380 to 3353383 3 - TSS region transcription start site region 3407
Gm11948 11 3353573 to 3354911 1338 - sense intronic lncRNA gene predicted gene 11948
Tssr106465 11 3355363 to 3355384 21 - TSS region transcription start site region 106465
Tssr106466 11 3371282 to 3371293 11 - TSS region transcription start site region 106466
Tssr106467 11 3371307 to 3371409 102 - TSS region transcription start site region 106467
Cpgi2478 11 3371411 to 3371717 306 CpG island CpG island 2478
Tssr3408 11 3393366 to 3393369 3 - TSS region transcription start site region 3408
Cpgi2479 11 3408740 to 3409408 668 CpG island CpG island 2479
Tssr106468 11 3409079 to 3409088 9 - TSS region transcription start site region 106468
Tssr106469 11 3409116 to 3409159 43 - TSS region transcription start site region 106469
Tssr106470 11 3409162 to 3409195 33 - TSS region transcription start site region 106470
Rnf185 11 3415982 to 3452363 36381 - protein coding gene ring finger protein 185
Cpgi2480 11 3451549 to 3452861 1312 CpG island CpG island 2480
Tssr106471 11 3452262 to 3452352 90 - TSS region transcription start site region 106471
Tssr106472 11 3452355 to 3452378 23 - TSS region transcription start site region 106472
8430429K09Rik 11 3452437 to 3479831 27394 + lncRNA gene RIKEN cDNA 8430429K09 gene
Tssr100052 11 3452458 to 3452510 52 + TSS region transcription start site region 100052
Tssr106473 11 3452887 to 3452899 12 - TSS region transcription start site region 106473
Tssr106474 11 3452937 to 3452952 15 - TSS region transcription start site region 106474
Gm11945 11 3470902 to 3471377 475 - pseudogene predicted gene 11945
Tssr106475 11 3471496 to 3471522 26 - TSS region transcription start site region 106475
Gm24439 11 3474285 to 3474401 116 - snoRNA gene predicted gene, 24439
D630033L23Rik 11 3476358 to 3477243 885 unclassified gene RIKEN cDNA D630033L23 gene
Tssr100053 11 3488208 to 3488232 24 + TSS region transcription start site region 100053
Tssr100054 11 3488275 to 3488287 12 + TSS region transcription start site region 100054
Pla2g3 11 3488284 to 3499350 11066 + protein coding gene phospholipase A2, group III
Tssr100055 11 3488292 to 3488304 12 + TSS region transcription start site region 100055
Inpp5j 11 3494375 to 3504821 10446 - protein coding gene inositol polyphosphate 5-phosphatase J
Tssr106476 11 3497423 to 3497435 12 - TSS region transcription start site region 106476
Cpgi2481 11 3502157 to 3502529 372 CpG island CpG island 2481
Tssr106477 11 3502636 to 3502667 31 - TSS region transcription start site region 106477
Tssr106478 11 3503001 to 3503017 16 - TSS region transcription start site region 106478
Tssr106479 11 3504747 to 3504762 15 - TSS region transcription start site region 106479
Tssr106480 11 3504766 to 3504833 67 - TSS region transcription start site region 106480
Tssr106481 11 3504993 to 3505003 10 - TSS region transcription start site region 106481
Tssr106482 11 3505462 to 3505471 9 - TSS region transcription start site region 106482
Tssr106483 11 3509224 to 3509227 3 - TSS region transcription start site region 106483