Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:33037883-33989200

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpsa-ps4 11 33038816 to 33039703 887 - pseudogene ribosomal protein S4, pseudogene 4
Tssr107318 11 33039773 to 33039782 9 - TSS region transcription start site region 107318
Gm12114 11 33068551 to 33080521 11970 + lincRNA gene predicted gene 12114
Fgf18 11 33117430 to 33147400 29970 - protein coding gene fibroblast growth factor 18
Cpgi2710 11 33122653 to 33123394 741 CpG island CpG island 2710
Cpgi2711 11 33146647 to 33148696 2049 CpG island CpG island 2711
Tssr107319 11 33147408 to 33147448 40 - TSS region transcription start site region 107319
Tssr107320 11 33147808 to 33147828 20 - TSS region transcription start site region 107320
2610201A13Rik 11 33150498 to 33151449 951 unclassified gene RIKEN cDNA 2610201A13 gene
Tssr107321 11 33151287 to 33151291 4 - TSS region transcription start site region 107321
Npm1 11 33152498 to 33163206 10708 - protein coding gene nucleophosmin 1
Tssr107322 11 33159962 to 33159980 18 - TSS region transcription start site region 107322
Cpgi2712 11 33162313 to 33163609 1296 CpG island CpG island 2712
Tssr107323 11 33162315 to 33162353 38 - TSS region transcription start site region 107323
Tssr107324 11 33163072 to 33163087 15 - TSS region transcription start site region 107324
Tssr100877 11 33163333 to 33163343 10 + TSS region transcription start site region 100877
Gm12115 11 33172919 to 33173365 446 + pseudogene predicted gene 12115
Cpgi2713 11 33180679 to 33180993 314 CpG island CpG island 2713
D11Mit205 11 33193299 to 33193402 103 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 205
Cpgi2714 11 33196852 to 33197137 285 CpG island CpG island 2714
Cpgi2715 11 33197694 to 33197958 264 CpG island CpG island 2715
Cpgi2716 11 33200104 to 33201932 1828 CpG island CpG island 2716
Tlx3 11 33200752 to 33203588 2836 - protein coding gene T cell leukemia, homeobox 3
Cpgi2717 11 33202181 to 33204809 2628 CpG island CpG island 2717
Tssr107325 11 33203551 to 33203561 10 - TSS region transcription start site region 107325
Tssr107326 11 33203563 to 33203583 20 - TSS region transcription start site region 107326
Tssr107327 11 33203589 to 33203599 10 - TSS region transcription start site region 107327
Tssr107328 11 33203600 to 33203611 11 - TSS region transcription start site region 107328
Tssr100878 11 33203730 to 33203741 11 + TSS region transcription start site region 100878
Gm12116 11 33204055 to 33221477 17422 + lincRNA gene predicted gene 12116
Ranbp17 11 33211795 to 33513746 301951 - protein coding gene RAN binding protein 17
Gm12117 11 33275758 to 33276737 979 - pseudogene predicted gene 12117
D11Ertd506e 11 33322603 to 33322848 245 DNA segment DNA segment, Chr 11, ERATO Doi 506, expressed
Anp32-ps 11 33394879 to 33395266 387 - pseudogene acidic (leucine-rich) nuclear phosphoprotein 32 family, pseudogene
Gm9450 11 33427885 to 33428470 585 - pseudogene predicted gene 9450
Gm12118 11 33438449 to 33438980 531 + pseudogene predicted gene 12118
D11Mit345 11 33507301 to 33507625 324 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 345
Cpgi2718 11 33512883 to 33514200 1317 CpG island CpG island 2718
Tssr100879 11 33513031 to 33513055 24 + TSS region transcription start site region 100879
Tssr100880 11 33513062 to 33513083 21 + TSS region transcription start site region 100880
1700072H12Rik 11 33513120 to 33514458 1338 unclassified gene RIKEN cDNA 1700072H12 gene
Tssr107329 11 33513626 to 33513666 40 - TSS region transcription start site region 107329
Tssr107330 11 33513671 to 33513682 11 - TSS region transcription start site region 107330
Tssr107331 11 33513722 to 33513733 11 - TSS region transcription start site region 107331
Tssr107332 11 33513736 to 33513771 35 - TSS region transcription start site region 107332
Tssr107333 11 33527349 to 33527360 11 - TSS region transcription start site region 107333
Tssr107334 11 33527371 to 33527380 9 - TSS region transcription start site region 107334
Tssr107335 11 33527396 to 33527424 28 - TSS region transcription start site region 107335
Tssr107336 11 33529767 to 33529794 27 - TSS region transcription start site region 107336
Tssr100881 11 33529874 to 33529897 23 + TSS region transcription start site region 100881
Tssr100882 11 33529948 to 33529985 37 + TSS region transcription start site region 100882
Tssr100883 11 33534757 to 33534761 4 + TSS region transcription start site region 100883
Tssr107337 11 33537205 to 33537224 19 - TSS region transcription start site region 107337
Tssr107338 11 33537401 to 33537407 6 - TSS region transcription start site region 107338
Tssr107339 11 33537432 to 33537452 20 - TSS region transcription start site region 107339
Gm36005 11 33541243 to 33544635 3392 - lncRNA gene predicted gene, 36005
Tssr107340 11 33544282 to 33544325 43 - TSS region transcription start site region 107340
Gabrp 11 33550781 to 33578959 28178 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, pi
Tssr107341 11 33578859 to 33578863 4 - TSS region transcription start site region 107341
Tssr107342 11 33578888 to 33578896 8 - TSS region transcription start site region 107342
Tssr107343 11 33578933 to 33578966 33 - TSS region transcription start site region 107343
Tssr107344 11 33578969 to 33578983 14 - TSS region transcription start site region 107344
D130052B06Rik 11 33607803 to 33625437 17634 + unclassified gene RIKEN cDNA D130052B06 gene
Kcnip1 11 33629339 to 33993152 363813 - protein coding gene Kv channel-interacting protein 1
D11Mit135 11 33666590 to 33666736 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 135
Cpgi2719 11 33680392 to 33680704 312 CpG island CpG island 2719
Gm12119 11 33695894 to 33697908 2014 + antisense lncRNA gene predicted gene 12119
D11Mit216 11 33698361 to 33698512 151 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 216
Gm12120 11 33705550 to 33711435 5885 + antisense lncRNA gene predicted gene 12120
Cpgi2720 11 33749479 to 33749745 266 CpG island CpG island 2720
Tssr107345 11 33755044 to 33755056 12 - TSS region transcription start site region 107345
Tssr107346 11 33755103 to 33755107 4 - TSS region transcription start site region 107346
Cpgi2721 11 33843127 to 33843910 783 CpG island CpG island 2721
Tssr107347 11 33843405 to 33843416 11 - TSS region transcription start site region 107347
Tssr107348 11 33843526 to 33843629 103 - TSS region transcription start site region 107348
Tssr107349 11 33843676 to 33843687 11 - TSS region transcription start site region 107349
Tssr107350 11 33843693 to 33843713 20 - TSS region transcription start site region 107350
Gm39679 11 33857280 to 33871278 13998 + lncRNA gene predicted gene, 39679
Tssr100884 11 33872445 to 33872451 6 + TSS region transcription start site region 100884
Tssr107351 11 33880120 to 33880123 3 - TSS region transcription start site region 107351
Gm39678 11 33889170 to 33895850 6680 - lncRNA gene predicted gene, 39678
Gm39677 11 33891046 to 33894473 3427 + lncRNA gene predicted gene, 39677
Tssr3460 11 33915377 to 33915378 1 - TSS region transcription start site region 3460
Tssr107352 11 33933013 to 33933018 5 - TSS region transcription start site region 107352
Gm36395 11 33933632 to 33937955 4323 + lncRNA gene predicted gene, 36395
Tssr100885 11 33940208 to 33940251 43 + TSS region transcription start site region 100885
Tssr100886 11 33940265 to 33940276 11 + TSS region transcription start site region 100886
Kcnmb1 11 33963013 to 33973641 10628 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 1
Tssr100887 11 33963206 to 33963243 37 + TSS region transcription start site region 100887
Tssr100888 11 33963281 to 33963297 16 + TSS region transcription start site region 100888
D11Mit173 11 33966086 to 33966219 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 173
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1