Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3299162-3519195

Filter by:
78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
9630045H20Rik 11 3300667 to 3304464 3797 unclassified gene RIKEN cDNA 9630045H20 gene
Gm12592 11 3305426 to 3331178 25752 - unclassified non-coding RNA gene predicted gene 12592
Gm11944 11 3309000 to 3320722 11722 + lncRNA gene predicted gene 11944
Tssr100037 11 3310056 to 3310061 5 + TSS region transcription start site region 100037
Tssr100038 11 3311032 to 3311059 27 + TSS region transcription start site region 100038
D11Dcr1 11 3315493 to 3315591 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 1
Pik3ip1 11 3330401 to 3342971 12570 + protein coding gene phosphoinositide-3-kinase interacting protein 1
Tssr100039 11 3330521 to 3330541 20 + TSS region transcription start site region 100039
Tssr100040 11 3330668 to 3330694 26 + TSS region transcription start site region 100040
Tssr100041 11 3330740 to 3330749 9 + TSS region transcription start site region 100041
Tssr3405 11 3330754 to 3330759 5 + TSS region transcription start site region 3405
Tssr100042 11 3330777 to 3330780 3 + TSS region transcription start site region 100042
Tssr100043 11 3330781 to 3330812 31 + TSS region transcription start site region 100043
Tssr100044 11 3330816 to 3330830 14 + TSS region transcription start site region 100044
Tssr100045 11 3330832 to 3330843 11 + TSS region transcription start site region 100045
Tssr100046 11 3330879 to 3330912 33 + TSS region transcription start site region 100046
Tssr100047 11 3330916 to 3330934 18 + TSS region transcription start site region 100047
Tssr100048 11 3330946 to 3330961 15 + TSS region transcription start site region 100048
Tssr106459 11 3331180 to 3331201 21 - TSS region transcription start site region 106459
Cpgi2477 11 3331772 to 3332720 948 CpG island CpG island 2477
Tssr106460 11 3332253 to 3332276 23 - TSS region transcription start site region 106460
Tssr106461 11 3332277 to 3332301 24 - TSS region transcription start site region 106461
Tssr100049 11 3332426 to 3332460 34 + TSS region transcription start site region 100049
Tssr100050 11 3332461 to 3332484 23 + TSS region transcription start site region 100050
Tssr3406 11 3332485 to 3332488 3 + TSS region transcription start site region 3406
Tssr100051 11 3332494 to 3332511 17 + TSS region transcription start site region 100051
Tssr106462 11 3334248 to 3334259 11 - TSS region transcription start site region 106462
Tssr106463 11 3335812 to 3335836 24 - TSS region transcription start site region 106463
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr106464 11 3348681 to 3348696 15 - TSS region transcription start site region 106464
Tssr3407 11 3353380 to 3353383 3 - TSS region transcription start site region 3407
Gm11948 11 3353573 to 3354911 1338 - sense intronic lncRNA gene predicted gene 11948
Tssr106465 11 3355363 to 3355384 21 - TSS region transcription start site region 106465
Tssr106466 11 3371282 to 3371293 11 - TSS region transcription start site region 106466
Tssr106467 11 3371307 to 3371409 102 - TSS region transcription start site region 106467
Cpgi2478 11 3371411 to 3371717 306 CpG island CpG island 2478
Tssr3408 11 3393366 to 3393369 3 - TSS region transcription start site region 3408
Cpgi2479 11 3408740 to 3409408 668 CpG island CpG island 2479
Tssr106468 11 3409079 to 3409088 9 - TSS region transcription start site region 106468
Tssr106469 11 3409116 to 3409159 43 - TSS region transcription start site region 106469
Tssr106470 11 3409162 to 3409195 33 - TSS region transcription start site region 106470
Rnf185 11 3415982 to 3452363 36381 - protein coding gene ring finger protein 185
Cpgi2480 11 3451549 to 3452861 1312 CpG island CpG island 2480
Tssr106471 11 3452262 to 3452352 90 - TSS region transcription start site region 106471
Tssr106472 11 3452355 to 3452378 23 - TSS region transcription start site region 106472
8430429K09Rik 11 3452437 to 3479831 27394 + lncRNA gene RIKEN cDNA 8430429K09 gene
Tssr100052 11 3452458 to 3452510 52 + TSS region transcription start site region 100052
Tssr106473 11 3452887 to 3452899 12 - TSS region transcription start site region 106473
Tssr106474 11 3452937 to 3452952 15 - TSS region transcription start site region 106474
Gm11945 11 3470902 to 3471377 475 - pseudogene predicted gene 11945
Tssr106475 11 3471496 to 3471522 26 - TSS region transcription start site region 106475
Gm24439 11 3474285 to 3474401 116 - snoRNA gene predicted gene, 24439
D630033L23Rik 11 3476358 to 3477243 885 unclassified gene RIKEN cDNA D630033L23 gene
Tssr100053 11 3488208 to 3488232 24 + TSS region transcription start site region 100053
Tssr100054 11 3488275 to 3488287 12 + TSS region transcription start site region 100054
Pla2g3 11 3488284 to 3499350 11066 + protein coding gene phospholipase A2, group III
Tssr100055 11 3488292 to 3488304 12 + TSS region transcription start site region 100055
Inpp5j 11 3494375 to 3504821 10446 - protein coding gene inositol polyphosphate 5-phosphatase J
Tssr106476 11 3497423 to 3497435 12 - TSS region transcription start site region 106476
Cpgi2481 11 3502157 to 3502529 372 CpG island CpG island 2481
Tssr106477 11 3502636 to 3502667 31 - TSS region transcription start site region 106477
Tssr106478 11 3503001 to 3503017 16 - TSS region transcription start site region 106478
Tssr106479 11 3504747 to 3504762 15 - TSS region transcription start site region 106479
Tssr106480 11 3504766 to 3504833 67 - TSS region transcription start site region 106480
Tssr106481 11 3504993 to 3505003 10 - TSS region transcription start site region 106481
Tssr106482 11 3505462 to 3505471 9 - TSS region transcription start site region 106482
Tssr106483 11 3509224 to 3509227 3 - TSS region transcription start site region 106483
Cpgi2482 11 3514600 to 3515125 525 CpG island CpG island 2482
Selenom 11 3514702 to 3517351 2649 + protein coding gene selenoprotein M
Tssr100056 11 3514861 to 3514894 33 + TSS region transcription start site region 100056
Tssr100057 11 3514897 to 3514928 31 + TSS region transcription start site region 100057
Tssr100058 11 3514930 to 3514952 22 + TSS region transcription start site region 100058
Tssr3409 11 3516055 to 3516073 18 + TSS region transcription start site region 3409
Tssr100059 11 3516829 to 3516876 47 + TSS region transcription start site region 100059
Cpgi2483 11 3516967 to 3517181 214 CpG island CpG island 2483
Cpgi2484 11 3517473 to 3517932 459 CpG island CpG island 2484
Smtn 11 3517522 to 3539654 22132 - protein coding gene smoothelin