Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:32400376-33244594

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3pxd2b 11 32347820 to 32428173 80353 + protein coding gene SH3 and PX domains 2B
Tssr100850 11 32400380 to 32400393 13 + TSS region transcription start site region 100850
Tssr100851 11 32400878 to 32400898 20 + TSS region transcription start site region 100851
Tssr100852 11 32405627 to 32405631 4 + TSS region transcription start site region 100852
Tssr107309 11 32409921 to 32409937 16 - TSS region transcription start site region 107309
Tssr100853 11 32422693 to 32422715 22 + TSS region transcription start site region 100853
Gm46276 11 32438016 to 32455033 17017 - lncRNA gene predicted gene, 46276
Cpgi2704 11 32454516 to 32456169 1653 CpG island CpG island 2704
Tssr100854 11 32455048 to 32455099 51 + TSS region transcription start site region 100854
Tssr100855 11 32455121 to 32455140 19 + TSS region transcription start site region 100855
Tssr100856 11 32455362 to 32455438 76 + TSS region transcription start site region 100856
Ubtd2 11 32455370 to 32516687 61317 + protein coding gene ubiquitin domain containing 2
Efcab9 11 32522751 to 32532081 9330 - protein coding gene EF-hand calcium binding domain 9
Tssr107310 11 32527541 to 32527550 9 - TSS region transcription start site region 107310
Tssr107311 11 32527551 to 32527579 28 - TSS region transcription start site region 107311
Cpgi2705 11 32532559 to 32533960 1401 CpG island CpG island 2705
Tssr100857 11 32532845 to 32532870 25 + TSS region transcription start site region 100857
Tssr100858 11 32533290 to 32533301 11 + TSS region transcription start site region 100858
Stk10 11 32533305 to 32624587 91282 + protein coding gene serine/threonine kinase 10
Tssr100859 11 32533309 to 32533335 26 + TSS region transcription start site region 100859
Tssr107312 11 32534116 to 32534123 7 - TSS region transcription start site region 107312
Tssr100860 11 32535982 to 32535997 15 + TSS region transcription start site region 100860
Tssr107313 11 32542720 to 32542767 47 - TSS region transcription start site region 107313
Tssr100861 11 32554285 to 32554334 49 + TSS region transcription start site region 100861
Tssr100862 11 32554906 to 32554915 9 + TSS region transcription start site region 100862
Tssr100863 11 32554966 to 32554978 12 + TSS region transcription start site region 100863
Tssr100864 11 32563065 to 32563074 9 + TSS region transcription start site region 100864
Tssr100865 11 32611046 to 32611060 14 + TSS region transcription start site region 100865
Tssr100866 11 32611064 to 32611083 19 + TSS region transcription start site region 100866
Cpgi2706 11 32614424 to 32614935 511 CpG island CpG island 2706
Tssr107314 11 32614683 to 32614694 11 - TSS region transcription start site region 107314
Tssr107315 11 32614700 to 32614710 10 - TSS region transcription start site region 107315
Tssr100867 11 32614748 to 32614783 35 + TSS region transcription start site region 100867
Tssr100868 11 32636448 to 32636451 3 + TSS region transcription start site region 100868
Cpgi2707 11 32642119 to 32643504 1385 CpG island CpG island 2707
Tssr100869 11 32642518 to 32642537 19 + TSS region transcription start site region 100869
Tssr100870 11 32642706 to 32642821 115 + TSS region transcription start site region 100870
Fbxw11 11 32642724 to 32746816 104092 + protein coding gene F-box and WD-40 domain protein 11
Tssr100871 11 32642826 to 32642841 15 + TSS region transcription start site region 100871
Tssr100872 11 32674487 to 32674491 4 + TSS region transcription start site region 100872
Tssr100873 11 32682947 to 32682952 5 + TSS region transcription start site region 100873
Tssr100874 11 32696851 to 32696854 3 + TSS region transcription start site region 100874
5830420C07Rik 11 32696994 to 32699560 2566 unclassified gene RIKEN cDNA 5830420C07 gene
Tssr100875 11 32744919 to 32744935 16 + TSS region transcription start site region 100875
Tssr100876 11 32745462 to 32745499 37 + TSS region transcription start site region 100876
Gm8192 11 32774682 to 32775639 957 - pseudogene predicted gene 8192
Gm35723 11 32782023 to 32845320 63297 + lncRNA gene predicted gene, 35723
4930555O08Rik 11 32789762 to 32790725 963 - lincRNA gene RIKEN cDNA 4930555O08 gene
Smim23 11 32820376 to 32824594 4218 - protein coding gene small integral membrane protein 23
Tssr107316 11 32824548 to 32824551 3 - TSS region transcription start site region 107316
Tssr107317 11 32824566 to 32824586 20 - TSS region transcription start site region 107317
Cpgi2708 11 32846847 to 32847020 173 CpG island CpG island 2708
Gm12110 11 32880362 to 32880940 578 - pseudogene predicted gene 12110
Gm12112 11 32910373 to 32910603 230 + pseudogene predicted gene 12112
Gm12111 11 32911615 to 32926445 14830 - lincRNA gene predicted gene 12111
Cpgi2709 11 32925864 to 32926112 248 CpG island CpG island 2709
Gm26052 11 32984216 to 32984299 83 - miRNA gene predicted gene, 26052
Rpsa-ps4 11 33038816 to 33039703 887 - pseudogene ribosomal protein S4, pseudogene 4
Tssr107318 11 33039773 to 33039782 9 - TSS region transcription start site region 107318
Gm12114 11 33068551 to 33080521 11970 + lincRNA gene predicted gene 12114
Fgf18 11 33117430 to 33147400 29970 - protein coding gene fibroblast growth factor 18
Cpgi2710 11 33122653 to 33123394 741 CpG island CpG island 2710
Cpgi2711 11 33146647 to 33148696 2049 CpG island CpG island 2711
Tssr107319 11 33147408 to 33147448 40 - TSS region transcription start site region 107319
Tssr107320 11 33147808 to 33147828 20 - TSS region transcription start site region 107320
2610201A13Rik 11 33150498 to 33151449 951 unclassified gene RIKEN cDNA 2610201A13 gene
Tssr107321 11 33151287 to 33151291 4 - TSS region transcription start site region 107321
Npm1 11 33152498 to 33163206 10708 - protein coding gene nucleophosmin 1
Tssr107322 11 33159962 to 33159980 18 - TSS region transcription start site region 107322
Cpgi2712 11 33162313 to 33163609 1296 CpG island CpG island 2712
Tssr107323 11 33162315 to 33162353 38 - TSS region transcription start site region 107323
Tssr107324 11 33163072 to 33163087 15 - TSS region transcription start site region 107324
Tssr100877 11 33163333 to 33163343 10 + TSS region transcription start site region 100877
Gm12115 11 33172919 to 33173365 446 + pseudogene predicted gene 12115
Cpgi2713 11 33180679 to 33180993 314 CpG island CpG island 2713
D11Mit205 11 33193299 to 33193402 103 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 205
Cpgi2714 11 33196852 to 33197137 285 CpG island CpG island 2714
Cpgi2715 11 33197694 to 33197958 264 CpG island CpG island 2715
Cpgi2716 11 33200104 to 33201932 1828 CpG island CpG island 2716
Tlx3 11 33200752 to 33203588 2836 - protein coding gene T cell leukemia, homeobox 3
Cpgi2717 11 33202181 to 33204809 2628 CpG island CpG island 2717
Tssr107325 11 33203551 to 33203561 10 - TSS region transcription start site region 107325
Tssr107326 11 33203563 to 33203583 20 - TSS region transcription start site region 107326
Tssr107327 11 33203589 to 33203599 10 - TSS region transcription start site region 107327
Tssr107328 11 33203600 to 33203611 11 - TSS region transcription start site region 107328
Tssr100878 11 33203730 to 33203741 11 + TSS region transcription start site region 100878
Gm12116 11 33204055 to 33221477 17422 + lincRNA gene predicted gene 12116
Ranbp17 11 33211795 to 33513746 301951 - protein coding gene RAN binding protein 17