Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:32288065-32838074

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hba-a2 11 32296489 to 32297298 809 + protein coding gene hemoglobin alpha, adult chain 2
Tssr100842 11 32296491 to 32296492 1 + TSS region transcription start site region 100842
Tssr100843 11 32297127 to 32297159 32 + TSS region transcription start site region 100843
Tssr100844 11 32297532 to 32297564 32 + TSS region transcription start site region 100844
Hbq1a 11 32300069 to 32300873 804 + protein coding gene hemoglobin, theta 1A
Gm46275 11 32304949 to 32312233 7284 + lncRNA gene predicted gene, 46275
Cpgi2702 11 32324783 to 32324971 188 CpG island CpG island 2702
Cpgi2703 11 32347164 to 32348606 1442 CpG island CpG island 2703
Tssr107307 11 32347726 to 32347732 6 - TSS region transcription start site region 107307
Tssr100845 11 32347800 to 32347865 65 + TSS region transcription start site region 100845
Sh3pxd2b 11 32347820 to 32428173 80353 + protein coding gene SH3 and PX domains 2B
Tssr107308 11 32349402 to 32349419 17 - TSS region transcription start site region 107308
Tssr100846 11 32358689 to 32358700 11 + TSS region transcription start site region 100846
Tssr100847 11 32385037 to 32385049 12 + TSS region transcription start site region 100847
Tssr100848 11 32385078 to 32385093 15 + TSS region transcription start site region 100848
Tssr100849 11 32398007 to 32398045 38 + TSS region transcription start site region 100849
Tssr100850 11 32400380 to 32400393 13 + TSS region transcription start site region 100850
Tssr100851 11 32400878 to 32400898 20 + TSS region transcription start site region 100851
Tssr100852 11 32405627 to 32405631 4 + TSS region transcription start site region 100852
Tssr107309 11 32409921 to 32409937 16 - TSS region transcription start site region 107309
Tssr100853 11 32422693 to 32422715 22 + TSS region transcription start site region 100853
Gm46276 11 32438016 to 32455033 17017 - lncRNA gene predicted gene, 46276
Cpgi2704 11 32454516 to 32456169 1653 CpG island CpG island 2704
Tssr100854 11 32455048 to 32455099 51 + TSS region transcription start site region 100854
Tssr100855 11 32455121 to 32455140 19 + TSS region transcription start site region 100855
Tssr100856 11 32455362 to 32455438 76 + TSS region transcription start site region 100856
Ubtd2 11 32455370 to 32516687 61317 + protein coding gene ubiquitin domain containing 2
Efcab9 11 32522751 to 32532081 9330 - protein coding gene EF-hand calcium binding domain 9
Tssr107310 11 32527541 to 32527550 9 - TSS region transcription start site region 107310
Tssr107311 11 32527551 to 32527579 28 - TSS region transcription start site region 107311
Cpgi2705 11 32532559 to 32533960 1401 CpG island CpG island 2705
Tssr100857 11 32532845 to 32532870 25 + TSS region transcription start site region 100857
Tssr100858 11 32533290 to 32533301 11 + TSS region transcription start site region 100858
Stk10 11 32533305 to 32624587 91282 + protein coding gene serine/threonine kinase 10
Tssr100859 11 32533309 to 32533335 26 + TSS region transcription start site region 100859
Tssr107312 11 32534116 to 32534123 7 - TSS region transcription start site region 107312
Tssr100860 11 32535982 to 32535997 15 + TSS region transcription start site region 100860
Tssr107313 11 32542720 to 32542767 47 - TSS region transcription start site region 107313
Tssr100861 11 32554285 to 32554334 49 + TSS region transcription start site region 100861
Tssr100862 11 32554906 to 32554915 9 + TSS region transcription start site region 100862
Tssr100863 11 32554966 to 32554978 12 + TSS region transcription start site region 100863
Tssr100864 11 32563065 to 32563074 9 + TSS region transcription start site region 100864
Tssr100865 11 32611046 to 32611060 14 + TSS region transcription start site region 100865
Tssr100866 11 32611064 to 32611083 19 + TSS region transcription start site region 100866
Cpgi2706 11 32614424 to 32614935 511 CpG island CpG island 2706
Tssr107314 11 32614683 to 32614694 11 - TSS region transcription start site region 107314
Tssr107315 11 32614700 to 32614710 10 - TSS region transcription start site region 107315
Tssr100867 11 32614748 to 32614783 35 + TSS region transcription start site region 100867
Tssr100868 11 32636448 to 32636451 3 + TSS region transcription start site region 100868
Cpgi2707 11 32642119 to 32643504 1385 CpG island CpG island 2707
Tssr100869 11 32642518 to 32642537 19 + TSS region transcription start site region 100869
Tssr100870 11 32642706 to 32642821 115 + TSS region transcription start site region 100870
Fbxw11 11 32642724 to 32746816 104092 + protein coding gene F-box and WD-40 domain protein 11
Tssr100871 11 32642826 to 32642841 15 + TSS region transcription start site region 100871
Tssr100872 11 32674487 to 32674491 4 + TSS region transcription start site region 100872
Tssr100873 11 32682947 to 32682952 5 + TSS region transcription start site region 100873
Tssr100874 11 32696851 to 32696854 3 + TSS region transcription start site region 100874
5830420C07Rik 11 32696994 to 32699560 2566 unclassified gene RIKEN cDNA 5830420C07 gene
Tssr100875 11 32744919 to 32744935 16 + TSS region transcription start site region 100875
Tssr100876 11 32745462 to 32745499 37 + TSS region transcription start site region 100876
Gm8192 11 32774682 to 32775639 957 - pseudogene predicted gene 8192
Gm35723 11 32782023 to 32845320 63297 + lncRNA gene predicted gene, 35723
4930555O08Rik 11 32789762 to 32790725 963 - lincRNA gene RIKEN cDNA 4930555O08 gene
Smim23 11 32820376 to 32824594 4218 - protein coding gene small integral membrane protein 23
Tssr107316 11 32824548 to 32824551 3 - TSS region transcription start site region 107316
Tssr107317 11 32824566 to 32824586 20 - TSS region transcription start site region 107317