Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:32235078-32535093

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nprl3 11 32231963 to 32267707 35744 - protein coding gene nitrogen permease regulator-like 3
Tssr3459 11 32237238 to 32237239 1 - TSS region transcription start site region 3459
Tssr107303 11 32265424 to 32265428 4 - TSS region transcription start site region 107303
Cpgi2699 11 32267209 to 32268170 961 CpG island CpG island 2699
Tssr107304 11 32267583 to 32267677 94 - TSS region transcription start site region 107304
Tssr100833 11 32267705 to 32267748 43 + TSS region transcription start site region 100833
Tssr100834 11 32276593 to 32276609 16 + TSS region transcription start site region 100834
Hba-x 11 32276600 to 32278116 1516 + protein coding gene hemoglobin X, alpha-like embryonic chain in Hba complex
D11Mit53 11 32277092 to 32277321 229 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 53
Tssr100835 11 32277293 to 32277304 11 + TSS region transcription start site region 100835
Tssr100836 11 32277564 to 32277584 20 + TSS region transcription start site region 100836
Tssr100837 11 32277586 to 32277613 27 + TSS region transcription start site region 100837
Cpgi2700 11 32277693 to 32278053 360 CpG island CpG island 2700
Tssr107305 11 32277763 to 32277774 11 - TSS region transcription start site region 107305
Tssr100838 11 32277907 to 32277928 21 + TSS region transcription start site region 100838
Tssr107306 11 32278001 to 32278041 40 - TSS region transcription start site region 107306
Hba-a1 11 32283672 to 32284486 814 + protein coding gene hemoglobin alpha, adult chain 1
Tssr100839 11 32284304 to 32284343 39 + TSS region transcription start site region 100839
Cpgi2701 11 32286842 to 32287128 286 CpG island CpG island 2701
Tssr100840 11 32286946 to 32286980 34 + TSS region transcription start site region 100840
Hbq1b 11 32286965 to 32287784 819 + protein coding gene hemoglobin, theta 1B
Tssr100841 11 32286991 to 32287007 16 + TSS region transcription start site region 100841
Hba-a2 11 32296489 to 32297298 809 + protein coding gene hemoglobin alpha, adult chain 2
Tssr100842 11 32296491 to 32296492 1 + TSS region transcription start site region 100842
Tssr100843 11 32297127 to 32297159 32 + TSS region transcription start site region 100843
Tssr100844 11 32297532 to 32297564 32 + TSS region transcription start site region 100844
Hbq1a 11 32300069 to 32300873 804 + protein coding gene hemoglobin, theta 1A
Gm46275 11 32304949 to 32312233 7284 + lncRNA gene predicted gene, 46275
Cpgi2702 11 32324783 to 32324971 188 CpG island CpG island 2702
Cpgi2703 11 32347164 to 32348606 1442 CpG island CpG island 2703
Tssr107307 11 32347726 to 32347732 6 - TSS region transcription start site region 107307
Tssr100845 11 32347800 to 32347865 65 + TSS region transcription start site region 100845
Sh3pxd2b 11 32347820 to 32428173 80353 + protein coding gene SH3 and PX domains 2B
Tssr107308 11 32349402 to 32349419 17 - TSS region transcription start site region 107308
Tssr100846 11 32358689 to 32358700 11 + TSS region transcription start site region 100846
Tssr100847 11 32385037 to 32385049 12 + TSS region transcription start site region 100847
Tssr100848 11 32385078 to 32385093 15 + TSS region transcription start site region 100848
Tssr100849 11 32398007 to 32398045 38 + TSS region transcription start site region 100849
Tssr100850 11 32400380 to 32400393 13 + TSS region transcription start site region 100850
Tssr100851 11 32400878 to 32400898 20 + TSS region transcription start site region 100851
Tssr100852 11 32405627 to 32405631 4 + TSS region transcription start site region 100852
Tssr107309 11 32409921 to 32409937 16 - TSS region transcription start site region 107309
Tssr100853 11 32422693 to 32422715 22 + TSS region transcription start site region 100853
Gm46276 11 32438016 to 32455033 17017 - lncRNA gene predicted gene, 46276
Cpgi2704 11 32454516 to 32456169 1653 CpG island CpG island 2704
Tssr100854 11 32455048 to 32455099 51 + TSS region transcription start site region 100854
Tssr100855 11 32455121 to 32455140 19 + TSS region transcription start site region 100855
Tssr100856 11 32455362 to 32455438 76 + TSS region transcription start site region 100856
Ubtd2 11 32455370 to 32516687 61317 + protein coding gene ubiquitin domain containing 2
Efcab9 11 32522751 to 32532081 9330 - protein coding gene EF-hand calcium binding domain 9
Tssr107310 11 32527541 to 32527550 9 - TSS region transcription start site region 107310
Tssr107311 11 32527551 to 32527579 28 - TSS region transcription start site region 107311
Cpgi2705 11 32532559 to 32533960 1401 CpG island CpG island 2705
Tssr100857 11 32532845 to 32532870 25 + TSS region transcription start site region 100857
Tssr100858 11 32533290 to 32533301 11 + TSS region transcription start site region 100858
Stk10 11 32533305 to 32624587 91282 + protein coding gene serine/threonine kinase 10
Tssr100859 11 32533309 to 32533335 26 + TSS region transcription start site region 100859
Tssr107312 11 32534116 to 32534123 7 - TSS region transcription start site region 107312