Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:31984921-32834937

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2693 11 32000317 to 32000582 265 CpG island CpG island 2693
Tssr100810 11 32000418 to 32000445 27 + TSS region transcription start site region 100810
Tssr100811 11 32000452 to 32000470 18 + TSS region transcription start site region 100811
Nsg2 11 32000463 to 32059202 58739 + protein coding gene neuron specific gene family member 2
Tssr100812 11 32000496 to 32000507 11 + TSS region transcription start site region 100812
Tssr100813 11 32001270 to 32001278 8 + TSS region transcription start site region 100813
Tssr100814 11 32001654 to 32001678 24 + TSS region transcription start site region 100814
Tssr100815 11 32001686 to 32001723 37 + TSS region transcription start site region 100815
Tssr100816 11 32001782 to 32001793 11 + TSS region transcription start site region 100816
Tssr100817 11 32001842 to 32001853 11 + TSS region transcription start site region 100817
Tssr3457 11 32024680 to 32024691 11 + TSS region transcription start site region 3457
Tssr100818 11 32024695 to 32024708 13 + TSS region transcription start site region 100818
Tssr100819 11 32024712 to 32024739 27 + TSS region transcription start site region 100819
Tssr100820 11 32024772 to 32024800 28 + TSS region transcription start site region 100820
Tssr100821 11 32024819 to 32024835 16 + TSS region transcription start site region 100821
Tssr100822 11 32024848 to 32024866 18 + TSS region transcription start site region 100822
Tssr100823 11 32024868 to 32024886 18 + TSS region transcription start site region 100823
Tssr100824 11 32031173 to 32031186 13 + TSS region transcription start site region 100824
Tssr100825 11 32057669 to 32057683 14 + TSS region transcription start site region 100825
Tssr100826 11 32057762 to 32057784 22 + TSS region transcription start site region 100826
Tssr100827 11 32058842 to 32058863 21 + TSS region transcription start site region 100827
Tssr100828 11 32058889 to 32058900 11 + TSS region transcription start site region 100828
Gm12108 11 32095261 to 32101228 5967 - lincRNA gene predicted gene 12108
Tssr3458 11 32103111 to 32103113 2 - TSS region transcription start site region 3458
Gm39676 11 32125827 to 32136643 10816 - lncRNA gene predicted gene, 39676
Tssr107294 11 32136107 to 32136145 38 - TSS region transcription start site region 107294
Gm40823 11 32161174 to 32173939 12765 + lncRNA gene predicted gene, 40823
Cpgi2694 11 32162170 to 32162508 338 CpG island CpG island 2694
Gm12109 11 32185005 to 32185701 696 + pseudogene predicted gene 12109
Il9r 11 32187541 to 32200279 12738 - protein coding gene interleukin 9 receptor
Tssr107295 11 32199260 to 32199297 37 - TSS region transcription start site region 107295
Tssr107296 11 32199337 to 32199352 15 - TSS region transcription start site region 107296
Tssr107297 11 32199369 to 32199380 11 - TSS region transcription start site region 107297
Tssr107298 11 32200248 to 32200271 23 - TSS region transcription start site region 107298
Tssr107299 11 32200273 to 32200286 13 - TSS region transcription start site region 107299
Tssr107300 11 32200466 to 32200472 6 - TSS region transcription start site region 107300
Cpgi2695 11 32205021 to 32205856 835 CpG island CpG island 2695
Tssr100829 11 32205411 to 32205481 70 + TSS region transcription start site region 100829
Snrnp25 11 32205415 to 32208984 3569 + protein coding gene small nuclear ribonucleoprotein 25 (U11/U12)
Tssr100830 11 32205483 to 32205504 21 + TSS region transcription start site region 100830
Tssr107301 11 32205687 to 32205692 5 - TSS region transcription start site region 107301
Rhbdf1 11 32209585 to 32222300 12715 - protein coding gene rhomboid 5 homolog 1
Cpgi2696 11 32213147 to 32213525 378 CpG island CpG island 2696
Cpgi2697 11 32221260 to 32222949 1689 CpG island CpG island 2697
Tssr100831 11 32221417 to 32221435 18 + TSS region transcription start site region 100831
Tssr107302 11 32222233 to 32222315 82 - TSS region transcription start site region 107302
Cpgi2698 11 32226238 to 32226954 716 CpG island CpG island 2698
Tssr100832 11 32226481 to 32226545 64 + TSS region transcription start site region 100832
Mpg 11 32226505 to 32232700 6195 + protein coding gene N-methylpurine-DNA glycosylase
Nprl3 11 32231963 to 32267707 35744 - protein coding gene nitrogen permease regulator-like 3
Tssr3459 11 32237238 to 32237239 1 - TSS region transcription start site region 3459
Tssr107303 11 32265424 to 32265428 4 - TSS region transcription start site region 107303
Cpgi2699 11 32267209 to 32268170 961 CpG island CpG island 2699
Tssr107304 11 32267583 to 32267677 94 - TSS region transcription start site region 107304
Tssr100833 11 32267705 to 32267748 43 + TSS region transcription start site region 100833
Tssr100834 11 32276593 to 32276609 16 + TSS region transcription start site region 100834
Hba-x 11 32276600 to 32278116 1516 + protein coding gene hemoglobin X, alpha-like embryonic chain in Hba complex
D11Mit53 11 32277092 to 32277321 229 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 53
Tssr100835 11 32277293 to 32277304 11 + TSS region transcription start site region 100835
Tssr100836 11 32277564 to 32277584 20 + TSS region transcription start site region 100836
Tssr100837 11 32277586 to 32277613 27 + TSS region transcription start site region 100837
Cpgi2700 11 32277693 to 32278053 360 CpG island CpG island 2700
Tssr107305 11 32277763 to 32277774 11 - TSS region transcription start site region 107305
Tssr100838 11 32277907 to 32277928 21 + TSS region transcription start site region 100838
Tssr107306 11 32278001 to 32278041 40 - TSS region transcription start site region 107306
Hba-a1 11 32283672 to 32284486 814 + protein coding gene hemoglobin alpha, adult chain 1
Tssr100839 11 32284304 to 32284343 39 + TSS region transcription start site region 100839
Cpgi2701 11 32286842 to 32287128 286 CpG island CpG island 2701
Tssr100840 11 32286946 to 32286980 34 + TSS region transcription start site region 100840
Hbq1b 11 32286965 to 32287784 819 + protein coding gene hemoglobin, theta 1B
Tssr100841 11 32286991 to 32287007 16 + TSS region transcription start site region 100841
Hba-a2 11 32296489 to 32297298 809 + protein coding gene hemoglobin alpha, adult chain 2
Tssr100842 11 32296491 to 32296492 1 + TSS region transcription start site region 100842
Tssr100843 11 32297127 to 32297159 32 + TSS region transcription start site region 100843
Tssr100844 11 32297532 to 32297564 32 + TSS region transcription start site region 100844
Hbq1a 11 32300069 to 32300873 804 + protein coding gene hemoglobin, theta 1A
Gm46275 11 32304949 to 32312233 7284 + lncRNA gene predicted gene, 46275
Cpgi2702 11 32324783 to 32324971 188 CpG island CpG island 2702
Cpgi2703 11 32347164 to 32348606 1442 CpG island CpG island 2703
Tssr107307 11 32347726 to 32347732 6 - TSS region transcription start site region 107307
Tssr100845 11 32347800 to 32347865 65 + TSS region transcription start site region 100845
Sh3pxd2b 11 32347820 to 32428173 80353 + protein coding gene SH3 and PX domains 2B
Tssr107308 11 32349402 to 32349419 17 - TSS region transcription start site region 107308
Tssr100846 11 32358689 to 32358700 11 + TSS region transcription start site region 100846
Tssr100847 11 32385037 to 32385049 12 + TSS region transcription start site region 100847
Tssr100848 11 32385078 to 32385093 15 + TSS region transcription start site region 100848
Tssr100849 11 32398007 to 32398045 38 + TSS region transcription start site region 100849
Tssr100850 11 32400380 to 32400393 13 + TSS region transcription start site region 100850
Tssr100851 11 32400878 to 32400898 20 + TSS region transcription start site region 100851
Tssr100852 11 32405627 to 32405631 4 + TSS region transcription start site region 100852
Tssr107309 11 32409921 to 32409937 16 - TSS region transcription start site region 107309
Tssr100853 11 32422693 to 32422715 22 + TSS region transcription start site region 100853
Gm46276 11 32438016 to 32455033 17017 - lncRNA gene predicted gene, 46276
Cpgi2704 11 32454516 to 32456169 1653 CpG island CpG island 2704
Tssr100854 11 32455048 to 32455099 51 + TSS region transcription start site region 100854
Tssr100855 11 32455121 to 32455140 19 + TSS region transcription start site region 100855
Tssr100856 11 32455362 to 32455438 76 + TSS region transcription start site region 100856
Ubtd2 11 32455370 to 32516687 61317 + protein coding gene ubiquitin domain containing 2
Efcab9 11 32522751 to 32532081 9330 - protein coding gene EF-hand calcium binding domain 9
Tssr107310 11 32527541 to 32527550 9 - TSS region transcription start site region 107310
Tssr107311 11 32527551 to 32527579 28 - TSS region transcription start site region 107311
Cpgi2705 11 32532559 to 32533960 1401 CpG island CpG island 2705
Tssr100857 11 32532845 to 32532870 25 + TSS region transcription start site region 100857
Tssr100858 11 32533290 to 32533301 11 + TSS region transcription start site region 100858
Stk10 11 32533305 to 32624587 91282 + protein coding gene serine/threonine kinase 10
Tssr100859 11 32533309 to 32533335 26 + TSS region transcription start site region 100859
Tssr107312 11 32534116 to 32534123 7 - TSS region transcription start site region 107312
Tssr100860 11 32535982 to 32535997 15 + TSS region transcription start site region 100860
Tssr107313 11 32542720 to 32542767 47 - TSS region transcription start site region 107313
Tssr100861 11 32554285 to 32554334 49 + TSS region transcription start site region 100861
Tssr100862 11 32554906 to 32554915 9 + TSS region transcription start site region 100862
Tssr100863 11 32554966 to 32554978 12 + TSS region transcription start site region 100863
Tssr100864 11 32563065 to 32563074 9 + TSS region transcription start site region 100864
Tssr100865 11 32611046 to 32611060 14 + TSS region transcription start site region 100865
Tssr100866 11 32611064 to 32611083 19 + TSS region transcription start site region 100866
Cpgi2706 11 32614424 to 32614935 511 CpG island CpG island 2706
Tssr107314 11 32614683 to 32614694 11 - TSS region transcription start site region 107314
Tssr107315 11 32614700 to 32614710 10 - TSS region transcription start site region 107315
Tssr100867 11 32614748 to 32614783 35 + TSS region transcription start site region 100867
Tssr100868 11 32636448 to 32636451 3 + TSS region transcription start site region 100868
Cpgi2707 11 32642119 to 32643504 1385 CpG island CpG island 2707
Tssr100869 11 32642518 to 32642537 19 + TSS region transcription start site region 100869
Tssr100870 11 32642706 to 32642821 115 + TSS region transcription start site region 100870
Fbxw11 11 32642724 to 32746816 104092 + protein coding gene F-box and WD-40 domain protein 11
Tssr100871 11 32642826 to 32642841 15 + TSS region transcription start site region 100871
Tssr100872 11 32674487 to 32674491 4 + TSS region transcription start site region 100872
Tssr100873 11 32682947 to 32682952 5 + TSS region transcription start site region 100873
Tssr100874 11 32696851 to 32696854 3 + TSS region transcription start site region 100874
5830420C07Rik 11 32696994 to 32699560 2566 unclassified gene RIKEN cDNA 5830420C07 gene
Tssr100875 11 32744919 to 32744935 16 + TSS region transcription start site region 100875
Tssr100876 11 32745462 to 32745499 37 + TSS region transcription start site region 100876
Gm8192 11 32774682 to 32775639 957 - pseudogene predicted gene 8192
Gm35723 11 32782023 to 32845320 63297 + lncRNA gene predicted gene, 35723
4930555O08Rik 11 32789762 to 32790725 963 - lincRNA gene RIKEN cDNA 4930555O08 gene
Smim23 11 32820376 to 32824594 4218 - protein coding gene small integral membrane protein 23
Tssr107316 11 32824548 to 32824551 3 - TSS region transcription start site region 107316
Tssr107317 11 32824566 to 32824586 20 - TSS region transcription start site region 107317