Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3195668-3465694

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fau-ps2 11 3196390 to 3196727 337 - pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2
Tssr106452 11 3198517 to 3198561 44 - TSS region transcription start site region 106452
Tssr100013 11 3198582 to 3198608 26 + TSS region transcription start site region 100013
Cpgi2474 11 3202112 to 3203348 1236 CpG island CpG island 2474
Eif4enif1 11 3202392 to 3244588 42196 + protein coding gene eukaryotic translation initiation factor 4E nuclear import factor 1
Tssr100014 11 3202612 to 3202654 42 + TSS region transcription start site region 100014
Tssr100015 11 3202684 to 3202729 45 + TSS region transcription start site region 100015
Tssr100016 11 3202876 to 3202904 28 + TSS region transcription start site region 100016
Tssr100017 11 3202908 to 3202933 25 + TSS region transcription start site region 100017
Tssr106453 11 3203333 to 3203360 27 - TSS region transcription start site region 106453
Tssr100018 11 3223379 to 3223382 3 + TSS region transcription start site region 100018
Tssr100019 11 3233984 to 3233988 4 + TSS region transcription start site region 100019
Drg1 11 3249919 to 3266652 16733 - protein coding gene developmentally regulated GTP binding protein 1
Cpgi2475 11 3265825 to 3266952 1127 CpG island CpG island 2475
Tssr106454 11 3266322 to 3266333 11 - TSS region transcription start site region 106454
Tssr106455 11 3266342 to 3266353 11 - TSS region transcription start site region 106455
Tssr106456 11 3266377 to 3266423 46 - TSS region transcription start site region 106456
Tssr100020 11 3266506 to 3266534 28 + TSS region transcription start site region 100020
Cpgi2476 11 3288482 to 3291899 3417 CpG island CpG island 2476
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Tssr100021 11 3289168 to 3289194 26 + TSS region transcription start site region 100021
Tssr100022 11 3289680 to 3289741 61 + TSS region transcription start site region 100022
Tssr100023 11 3289880 to 3289922 42 + TSS region transcription start site region 100023
Tssr100024 11 3290300 to 3290348 48 + TSS region transcription start site region 100024
Tssr100025 11 3290463 to 3290485 22 + TSS region transcription start site region 100025
Tssr100026 11 3290808 to 3290839 31 + TSS region transcription start site region 100026
Tssr100027 11 3291327 to 3291371 44 + TSS region transcription start site region 100027
Tssr106457 11 3291609 to 3291630 21 - TSS region transcription start site region 106457
Tssr106458 11 3291642 to 3291662 20 - TSS region transcription start site region 106458
Tssr100028 11 3291738 to 3291766 28 + TSS region transcription start site region 100028
Tssr100029 11 3291829 to 3291848 19 + TSS region transcription start site region 100029
Tssr100030 11 3292286 to 3292340 54 + TSS region transcription start site region 100030
Tssr100031 11 3292443 to 3292452 9 + TSS region transcription start site region 100031
Tssr100032 11 3292938 to 3292962 24 + TSS region transcription start site region 100032
Tssr100033 11 3293109 to 3293128 19 + TSS region transcription start site region 100033
Tssr100034 11 3293138 to 3293160 22 + TSS region transcription start site region 100034
Tssr100035 11 3293228 to 3293245 17 + TSS region transcription start site region 100035
Tssr100036 11 3293276 to 3293288 12 + TSS region transcription start site region 100036
9630045H20Rik 11 3300667 to 3304464 3797 unclassified gene RIKEN cDNA 9630045H20 gene
Gm12592 11 3305426 to 3331178 25752 - unclassified non-coding RNA gene predicted gene 12592
Gm11944 11 3309000 to 3320722 11722 + lncRNA gene predicted gene 11944
Tssr100037 11 3310056 to 3310061 5 + TSS region transcription start site region 100037
Tssr100038 11 3311032 to 3311059 27 + TSS region transcription start site region 100038
D11Dcr1 11 3315493 to 3315591 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 1
Pik3ip1 11 3330401 to 3342971 12570 + protein coding gene phosphoinositide-3-kinase interacting protein 1
Tssr100039 11 3330521 to 3330541 20 + TSS region transcription start site region 100039
Tssr100040 11 3330668 to 3330694 26 + TSS region transcription start site region 100040
Tssr100041 11 3330740 to 3330749 9 + TSS region transcription start site region 100041
Tssr3405 11 3330754 to 3330759 5 + TSS region transcription start site region 3405
Tssr100042 11 3330777 to 3330780 3 + TSS region transcription start site region 100042
Tssr100043 11 3330781 to 3330812 31 + TSS region transcription start site region 100043
Tssr100044 11 3330816 to 3330830 14 + TSS region transcription start site region 100044
Tssr100045 11 3330832 to 3330843 11 + TSS region transcription start site region 100045
Tssr100046 11 3330879 to 3330912 33 + TSS region transcription start site region 100046
Tssr100047 11 3330916 to 3330934 18 + TSS region transcription start site region 100047
Tssr100048 11 3330946 to 3330961 15 + TSS region transcription start site region 100048
Tssr106459 11 3331180 to 3331201 21 - TSS region transcription start site region 106459
Cpgi2477 11 3331772 to 3332720 948 CpG island CpG island 2477
Tssr106460 11 3332253 to 3332276 23 - TSS region transcription start site region 106460
Tssr106461 11 3332277 to 3332301 24 - TSS region transcription start site region 106461
Tssr100049 11 3332426 to 3332460 34 + TSS region transcription start site region 100049
Tssr100050 11 3332461 to 3332484 23 + TSS region transcription start site region 100050
Tssr3406 11 3332485 to 3332488 3 + TSS region transcription start site region 3406
Tssr100051 11 3332494 to 3332511 17 + TSS region transcription start site region 100051
Tssr106462 11 3334248 to 3334259 11 - TSS region transcription start site region 106462
Tssr106463 11 3335812 to 3335836 24 - TSS region transcription start site region 106463
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr106464 11 3348681 to 3348696 15 - TSS region transcription start site region 106464
Tssr3407 11 3353380 to 3353383 3 - TSS region transcription start site region 3407
Gm11948 11 3353573 to 3354911 1338 - sense intronic lncRNA gene predicted gene 11948
Tssr106465 11 3355363 to 3355384 21 - TSS region transcription start site region 106465
Tssr106466 11 3371282 to 3371293 11 - TSS region transcription start site region 106466
Tssr106467 11 3371307 to 3371409 102 - TSS region transcription start site region 106467
Cpgi2478 11 3371411 to 3371717 306 CpG island CpG island 2478
Tssr3408 11 3393366 to 3393369 3 - TSS region transcription start site region 3408
Cpgi2479 11 3408740 to 3409408 668 CpG island CpG island 2479
Tssr106468 11 3409079 to 3409088 9 - TSS region transcription start site region 106468
Tssr106469 11 3409116 to 3409159 43 - TSS region transcription start site region 106469
Tssr106470 11 3409162 to 3409195 33 - TSS region transcription start site region 106470
Rnf185 11 3415982 to 3452363 36381 - protein coding gene ring finger protein 185
Cpgi2480 11 3451549 to 3452861 1312 CpG island CpG island 2480
Tssr106471 11 3452262 to 3452352 90 - TSS region transcription start site region 106471
Tssr106472 11 3452355 to 3452378 23 - TSS region transcription start site region 106472
8430429K09Rik 11 3452437 to 3479831 27394 + lncRNA gene RIKEN cDNA 8430429K09 gene
Tssr100052 11 3452458 to 3452510 52 + TSS region transcription start site region 100052
Tssr106473 11 3452887 to 3452899 12 - TSS region transcription start site region 106473
Tssr106474 11 3452937 to 3452952 15 - TSS region transcription start site region 106474