Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:31915261-32281228

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpeb4 11 31872211 to 31935634 63423 + protein coding gene cytoplasmic polyadenylation element binding protein 4
Tssr100802 11 31928116 to 31928137 21 + TSS region transcription start site region 100802
Tssr100803 11 31931782 to 31931804 22 + TSS region transcription start site region 100803
Tssr100804 11 31933344 to 31933358 14 + TSS region transcription start site region 100804
Tssr100805 11 31933659 to 31933674 15 + TSS region transcription start site region 100805
Tssr100806 11 31935044 to 31935069 25 + TSS region transcription start site region 100806
Tssr100807 11 31935109 to 31935132 23 + TSS region transcription start site region 100807
Gm19020 11 31956357 to 31957077 720 - pseudogene predicted gene, 19020
Cpgi2692 11 31965502 to 31966169 667 CpG island CpG island 2692
Tssr100808 11 31965542 to 31965597 55 + TSS region transcription start site region 100808
4930524B15Rik 11 31965592 to 31979651 14059 + protein coding gene RIKEN cDNA 4930524B15 gene
Tssr100809 11 31965604 to 31965611 7 + TSS region transcription start site region 100809
Gm35267 11 31977886 to 31978354 468 - pseudogene predicted gene, 35267
Cpgi2693 11 32000317 to 32000582 265 CpG island CpG island 2693
Tssr100810 11 32000418 to 32000445 27 + TSS region transcription start site region 100810
Tssr100811 11 32000452 to 32000470 18 + TSS region transcription start site region 100811
Nsg2 11 32000463 to 32059202 58739 + protein coding gene neuron specific gene family member 2
Tssr100812 11 32000496 to 32000507 11 + TSS region transcription start site region 100812
Tssr100813 11 32001270 to 32001278 8 + TSS region transcription start site region 100813
Tssr100814 11 32001654 to 32001678 24 + TSS region transcription start site region 100814
Tssr100815 11 32001686 to 32001723 37 + TSS region transcription start site region 100815
Tssr100816 11 32001782 to 32001793 11 + TSS region transcription start site region 100816
Tssr100817 11 32001842 to 32001853 11 + TSS region transcription start site region 100817
Tssr3457 11 32024680 to 32024691 11 + TSS region transcription start site region 3457
Tssr100818 11 32024695 to 32024708 13 + TSS region transcription start site region 100818
Tssr100819 11 32024712 to 32024739 27 + TSS region transcription start site region 100819
Tssr100820 11 32024772 to 32024800 28 + TSS region transcription start site region 100820
Tssr100821 11 32024819 to 32024835 16 + TSS region transcription start site region 100821
Tssr100822 11 32024848 to 32024866 18 + TSS region transcription start site region 100822
Tssr100823 11 32024868 to 32024886 18 + TSS region transcription start site region 100823
Tssr100824 11 32031173 to 32031186 13 + TSS region transcription start site region 100824
Tssr100825 11 32057669 to 32057683 14 + TSS region transcription start site region 100825
Tssr100826 11 32057762 to 32057784 22 + TSS region transcription start site region 100826
Tssr100827 11 32058842 to 32058863 21 + TSS region transcription start site region 100827
Tssr100828 11 32058889 to 32058900 11 + TSS region transcription start site region 100828
Gm12108 11 32095261 to 32101228 5967 - lincRNA gene predicted gene 12108
Tssr3458 11 32103111 to 32103113 2 - TSS region transcription start site region 3458
Gm39676 11 32125827 to 32136643 10816 - lncRNA gene predicted gene, 39676
Tssr107294 11 32136107 to 32136145 38 - TSS region transcription start site region 107294
Gm40823 11 32161174 to 32173939 12765 + lncRNA gene predicted gene, 40823
Cpgi2694 11 32162170 to 32162508 338 CpG island CpG island 2694
Gm12109 11 32185005 to 32185701 696 + pseudogene predicted gene 12109
Il9r 11 32187541 to 32200279 12738 - protein coding gene interleukin 9 receptor
Tssr107295 11 32199260 to 32199297 37 - TSS region transcription start site region 107295
Tssr107296 11 32199337 to 32199352 15 - TSS region transcription start site region 107296
Tssr107297 11 32199369 to 32199380 11 - TSS region transcription start site region 107297
Tssr107298 11 32200248 to 32200271 23 - TSS region transcription start site region 107298
Tssr107299 11 32200273 to 32200286 13 - TSS region transcription start site region 107299
Tssr107300 11 32200466 to 32200472 6 - TSS region transcription start site region 107300
Cpgi2695 11 32205021 to 32205856 835 CpG island CpG island 2695
Tssr100829 11 32205411 to 32205481 70 + TSS region transcription start site region 100829
Snrnp25 11 32205415 to 32208984 3569 + protein coding gene small nuclear ribonucleoprotein 25 (U11/U12)
Tssr100830 11 32205483 to 32205504 21 + TSS region transcription start site region 100830
Tssr107301 11 32205687 to 32205692 5 - TSS region transcription start site region 107301
Rhbdf1 11 32209585 to 32222300 12715 - protein coding gene rhomboid 5 homolog 1
Cpgi2696 11 32213147 to 32213525 378 CpG island CpG island 2696
Cpgi2697 11 32221260 to 32222949 1689 CpG island CpG island 2697
Tssr100831 11 32221417 to 32221435 18 + TSS region transcription start site region 100831
Tssr107302 11 32222233 to 32222315 82 - TSS region transcription start site region 107302
Cpgi2698 11 32226238 to 32226954 716 CpG island CpG island 2698
Tssr100832 11 32226481 to 32226545 64 + TSS region transcription start site region 100832
Mpg 11 32226505 to 32232700 6195 + protein coding gene N-methylpurine-DNA glycosylase
Nprl3 11 32231963 to 32267707 35744 - protein coding gene nitrogen permease regulator-like 3
Tssr3459 11 32237238 to 32237239 1 - TSS region transcription start site region 3459
Tssr107303 11 32265424 to 32265428 4 - TSS region transcription start site region 107303
Cpgi2699 11 32267209 to 32268170 961 CpG island CpG island 2699
Tssr107304 11 32267583 to 32267677 94 - TSS region transcription start site region 107304
Tssr100833 11 32267705 to 32267748 43 + TSS region transcription start site region 100833
Tssr100834 11 32276593 to 32276609 16 + TSS region transcription start site region 100834
Hba-x 11 32276600 to 32278116 1516 + protein coding gene hemoglobin X, alpha-like embryonic chain in Hba complex
D11Mit53 11 32277092 to 32277321 229 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 53
Tssr100835 11 32277293 to 32277304 11 + TSS region transcription start site region 100835
Tssr100836 11 32277564 to 32277584 20 + TSS region transcription start site region 100836
Tssr100837 11 32277586 to 32277613 27 + TSS region transcription start site region 100837
Cpgi2700 11 32277693 to 32278053 360 CpG island CpG island 2700
Tssr107305 11 32277763 to 32277774 11 - TSS region transcription start site region 107305
Tssr100838 11 32277907 to 32277928 21 + TSS region transcription start site region 100838
Tssr107306 11 32278001 to 32278041 40 - TSS region transcription start site region 107306