Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3179000-3450722

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sfi1 11 3131850 to 3193463 61613 - protein coding gene Sfi1 homolog, spindle assembly associated (yeast)
Cpgi2464 11 3183767 to 3184055 288 CpG island CpG island 2464
Cpgi2468 11 3188729 to 3189425 696 CpG island CpG island 2468
Cpgi2469 11 3192018 to 3194670 2652 CpG island CpG island 2469
9530037G02Rik 11 3193080 to 3194309 1229 unclassified gene RIKEN cDNA 9530037G02 gene
Tssr106450 11 3193127 to 3193173 46 - TSS region transcription start site region 106450
Tssr106451 11 3193388 to 3193450 62 - TSS region transcription start site region 106451
Tssr100011 11 3193490 to 3193510 20 + TSS region transcription start site region 100011
Gm12735 11 3193516 to 3194263 747 - antisense lncRNA gene predicted gene 12735
Tssr100012 11 3193562 to 3193578 16 + TSS region transcription start site region 100012
Fau-ps2 11 3196390 to 3196727 337 - pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2
Tssr106452 11 3198517 to 3198561 44 - TSS region transcription start site region 106452
Tssr100013 11 3198582 to 3198608 26 + TSS region transcription start site region 100013
Cpgi2474 11 3202112 to 3203348 1236 CpG island CpG island 2474
Eif4enif1 11 3202392 to 3244588 42196 + protein coding gene eukaryotic translation initiation factor 4E nuclear import factor 1
Tssr100014 11 3202612 to 3202654 42 + TSS region transcription start site region 100014
Tssr100015 11 3202684 to 3202729 45 + TSS region transcription start site region 100015
Tssr100016 11 3202876 to 3202904 28 + TSS region transcription start site region 100016
Tssr100017 11 3202908 to 3202933 25 + TSS region transcription start site region 100017
Tssr106453 11 3203333 to 3203360 27 - TSS region transcription start site region 106453
Tssr100018 11 3223379 to 3223382 3 + TSS region transcription start site region 100018
Tssr100019 11 3233984 to 3233988 4 + TSS region transcription start site region 100019
Drg1 11 3249919 to 3266652 16733 - protein coding gene developmentally regulated GTP binding protein 1
Cpgi2475 11 3265825 to 3266952 1127 CpG island CpG island 2475
Tssr106454 11 3266322 to 3266333 11 - TSS region transcription start site region 106454
Tssr106455 11 3266342 to 3266353 11 - TSS region transcription start site region 106455
Tssr106456 11 3266377 to 3266423 46 - TSS region transcription start site region 106456
Tssr100020 11 3266506 to 3266534 28 + TSS region transcription start site region 100020
Cpgi2476 11 3288482 to 3291899 3417 CpG island CpG island 2476
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Tssr100021 11 3289168 to 3289194 26 + TSS region transcription start site region 100021
Tssr100022 11 3289680 to 3289741 61 + TSS region transcription start site region 100022
Tssr100023 11 3289880 to 3289922 42 + TSS region transcription start site region 100023
Tssr100024 11 3290300 to 3290348 48 + TSS region transcription start site region 100024
Tssr100025 11 3290463 to 3290485 22 + TSS region transcription start site region 100025
Tssr100026 11 3290808 to 3290839 31 + TSS region transcription start site region 100026
Tssr100027 11 3291327 to 3291371 44 + TSS region transcription start site region 100027
Tssr106457 11 3291609 to 3291630 21 - TSS region transcription start site region 106457
Tssr106458 11 3291642 to 3291662 20 - TSS region transcription start site region 106458
Tssr100028 11 3291738 to 3291766 28 + TSS region transcription start site region 100028
Tssr100029 11 3291829 to 3291848 19 + TSS region transcription start site region 100029
Tssr100030 11 3292286 to 3292340 54 + TSS region transcription start site region 100030
Tssr100031 11 3292443 to 3292452 9 + TSS region transcription start site region 100031
Tssr100032 11 3292938 to 3292962 24 + TSS region transcription start site region 100032
Tssr100033 11 3293109 to 3293128 19 + TSS region transcription start site region 100033
Tssr100034 11 3293138 to 3293160 22 + TSS region transcription start site region 100034
Tssr100035 11 3293228 to 3293245 17 + TSS region transcription start site region 100035
Tssr100036 11 3293276 to 3293288 12 + TSS region transcription start site region 100036
9630045H20Rik 11 3300667 to 3304464 3797 unclassified gene RIKEN cDNA 9630045H20 gene
Gm12592 11 3305426 to 3331178 25752 - unclassified non-coding RNA gene predicted gene 12592
Gm11944 11 3309000 to 3320722 11722 + lncRNA gene predicted gene 11944
Tssr100037 11 3310056 to 3310061 5 + TSS region transcription start site region 100037
Tssr100038 11 3311032 to 3311059 27 + TSS region transcription start site region 100038
D11Dcr1 11 3315493 to 3315591 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 1
Pik3ip1 11 3330401 to 3342971 12570 + protein coding gene phosphoinositide-3-kinase interacting protein 1
Tssr100039 11 3330521 to 3330541 20 + TSS region transcription start site region 100039
Tssr100040 11 3330668 to 3330694 26 + TSS region transcription start site region 100040
Tssr100041 11 3330740 to 3330749 9 + TSS region transcription start site region 100041
Tssr3405 11 3330754 to 3330759 5 + TSS region transcription start site region 3405
Tssr100042 11 3330777 to 3330780 3 + TSS region transcription start site region 100042
Tssr100043 11 3330781 to 3330812 31 + TSS region transcription start site region 100043
Tssr100044 11 3330816 to 3330830 14 + TSS region transcription start site region 100044
Tssr100045 11 3330832 to 3330843 11 + TSS region transcription start site region 100045
Tssr100046 11 3330879 to 3330912 33 + TSS region transcription start site region 100046
Tssr100047 11 3330916 to 3330934 18 + TSS region transcription start site region 100047
Tssr100048 11 3330946 to 3330961 15 + TSS region transcription start site region 100048
Tssr106459 11 3331180 to 3331201 21 - TSS region transcription start site region 106459
Cpgi2477 11 3331772 to 3332720 948 CpG island CpG island 2477
Tssr106460 11 3332253 to 3332276 23 - TSS region transcription start site region 106460
Tssr106461 11 3332277 to 3332301 24 - TSS region transcription start site region 106461
Tssr100049 11 3332426 to 3332460 34 + TSS region transcription start site region 100049
Tssr100050 11 3332461 to 3332484 23 + TSS region transcription start site region 100050
Tssr3406 11 3332485 to 3332488 3 + TSS region transcription start site region 3406
Tssr100051 11 3332494 to 3332511 17 + TSS region transcription start site region 100051
Tssr106462 11 3334248 to 3334259 11 - TSS region transcription start site region 106462
Tssr106463 11 3335812 to 3335836 24 - TSS region transcription start site region 106463
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr106464 11 3348681 to 3348696 15 - TSS region transcription start site region 106464
Tssr3407 11 3353380 to 3353383 3 - TSS region transcription start site region 3407
Gm11948 11 3353573 to 3354911 1338 - sense intronic lncRNA gene predicted gene 11948
Tssr106465 11 3355363 to 3355384 21 - TSS region transcription start site region 106465
Tssr106466 11 3371282 to 3371293 11 - TSS region transcription start site region 106466
Tssr106467 11 3371307 to 3371409 102 - TSS region transcription start site region 106467
Cpgi2478 11 3371411 to 3371717 306 CpG island CpG island 2478
Tssr3408 11 3393366 to 3393369 3 - TSS region transcription start site region 3408
Cpgi2479 11 3408740 to 3409408 668 CpG island CpG island 2479
Tssr106468 11 3409079 to 3409088 9 - TSS region transcription start site region 106468
Tssr106469 11 3409116 to 3409159 43 - TSS region transcription start site region 106469
Tssr106470 11 3409162 to 3409195 33 - TSS region transcription start site region 106470
Rnf185 11 3415982 to 3452363 36381 - protein coding gene ring finger protein 185