Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3163984-3303988

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sfi1 11 3131850 to 3193463 61613 - protein coding gene Sfi1 homolog, spindle assembly associated (yeast)
Tssr100010 11 3163954 to 3164001 47 + TSS region transcription start site region 100010
Cpgi2452 11 3165381 to 3165986 605 CpG island CpG island 2452
Cpgi2457 11 3172306 to 3172581 275 CpG island CpG island 2457
Tssr106448 11 3172795 to 3172797 2 - TSS region transcription start site region 106448
Cpgi2458 11 3173264 to 3173806 542 CpG island CpG island 2458
Tssr106449 11 3173319 to 3173329 10 - TSS region transcription start site region 106449
Cpgi2461 11 3176616 to 3178184 1568 CpG island CpG island 2461
Cpgi2464 11 3183767 to 3184055 288 CpG island CpG island 2464
Cpgi2468 11 3188729 to 3189425 696 CpG island CpG island 2468
Cpgi2469 11 3192018 to 3194670 2652 CpG island CpG island 2469
9530037G02Rik 11 3193080 to 3194309 1229 unclassified gene RIKEN cDNA 9530037G02 gene
Tssr106450 11 3193127 to 3193173 46 - TSS region transcription start site region 106450
Tssr106451 11 3193388 to 3193450 62 - TSS region transcription start site region 106451
Tssr100011 11 3193490 to 3193510 20 + TSS region transcription start site region 100011
Gm12735 11 3193516 to 3194263 747 - antisense lncRNA gene predicted gene 12735
Tssr100012 11 3193562 to 3193578 16 + TSS region transcription start site region 100012
Fau-ps2 11 3196390 to 3196727 337 - pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2
Tssr106452 11 3198517 to 3198561 44 - TSS region transcription start site region 106452
Tssr100013 11 3198582 to 3198608 26 + TSS region transcription start site region 100013
Cpgi2474 11 3202112 to 3203348 1236 CpG island CpG island 2474
Eif4enif1 11 3202392 to 3244588 42196 + protein coding gene eukaryotic translation initiation factor 4E nuclear import factor 1
Tssr100014 11 3202612 to 3202654 42 + TSS region transcription start site region 100014
Tssr100015 11 3202684 to 3202729 45 + TSS region transcription start site region 100015
Tssr100016 11 3202876 to 3202904 28 + TSS region transcription start site region 100016
Tssr100017 11 3202908 to 3202933 25 + TSS region transcription start site region 100017
Tssr106453 11 3203333 to 3203360 27 - TSS region transcription start site region 106453
Tssr100018 11 3223379 to 3223382 3 + TSS region transcription start site region 100018
Tssr100019 11 3233984 to 3233988 4 + TSS region transcription start site region 100019
Drg1 11 3249919 to 3266652 16733 - protein coding gene developmentally regulated GTP binding protein 1
Cpgi2475 11 3265825 to 3266952 1127 CpG island CpG island 2475
Tssr106454 11 3266322 to 3266333 11 - TSS region transcription start site region 106454
Tssr106455 11 3266342 to 3266353 11 - TSS region transcription start site region 106455
Tssr106456 11 3266377 to 3266423 46 - TSS region transcription start site region 106456
Tssr100020 11 3266506 to 3266534 28 + TSS region transcription start site region 100020
Cpgi2476 11 3288482 to 3291899 3417 CpG island CpG island 2476
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Tssr100021 11 3289168 to 3289194 26 + TSS region transcription start site region 100021
Tssr100022 11 3289680 to 3289741 61 + TSS region transcription start site region 100022
Tssr100023 11 3289880 to 3289922 42 + TSS region transcription start site region 100023
Tssr100024 11 3290300 to 3290348 48 + TSS region transcription start site region 100024
Tssr100025 11 3290463 to 3290485 22 + TSS region transcription start site region 100025
Tssr100026 11 3290808 to 3290839 31 + TSS region transcription start site region 100026
Tssr100027 11 3291327 to 3291371 44 + TSS region transcription start site region 100027
Tssr106457 11 3291609 to 3291630 21 - TSS region transcription start site region 106457
Tssr106458 11 3291642 to 3291662 20 - TSS region transcription start site region 106458
Tssr100028 11 3291738 to 3291766 28 + TSS region transcription start site region 100028
Tssr100029 11 3291829 to 3291848 19 + TSS region transcription start site region 100029
Tssr100030 11 3292286 to 3292340 54 + TSS region transcription start site region 100030
Tssr100031 11 3292443 to 3292452 9 + TSS region transcription start site region 100031
Tssr100032 11 3292938 to 3292962 24 + TSS region transcription start site region 100032
Tssr100033 11 3293109 to 3293128 19 + TSS region transcription start site region 100033
Tssr100034 11 3293138 to 3293160 22 + TSS region transcription start site region 100034
Tssr100035 11 3293228 to 3293245 17 + TSS region transcription start site region 100035
Tssr100036 11 3293276 to 3293288 12 + TSS region transcription start site region 100036
9630045H20Rik 11 3300667 to 3304464 3797 unclassified gene RIKEN cDNA 9630045H20 gene