Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:30963440-31775566

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asb3 11 30954222 to 31102704 148482 + protein coding gene ankyrin repeat and SOCS box-containing 3
Chac2 11 30976707 to 30986350 9643 - protein coding gene ChaC, cation transport regulator 2
Tssr100767 11 30985455 to 30985459 4 + TSS region transcription start site region 100767
Cpgi2687 11 30986103 to 30986348 245 CpG island CpG island 2687
Tssr107273 11 30986246 to 30986257 11 - TSS region transcription start site region 107273
Tssr107274 11 30986264 to 30986296 32 - TSS region transcription start site region 107274
Tssr107275 11 30986297 to 30986325 28 - TSS region transcription start site region 107275
Tssr107276 11 30986326 to 30986372 46 - TSS region transcription start site region 107276
Gm12102 11 31003328 to 31003898 570 - pseudogene predicted gene 12102
A230054M22Rik 11 31103233 to 31105354 2121 unclassified gene RIKEN cDNA A230054M22 gene
Gm12105 11 31120003 to 31120781 778 + pseudogene predicted gene 12105
Gm40822 11 31161932 to 31169846 7914 - lncRNA gene predicted gene, 40822
Gm12106 11 31177818 to 31184374 6556 - pseudogene predicted gene 12106
Gm17332 11 31182376 to 31182462 86 - protein coding gene predicted gene, 17332
Tssr107277 11 31359334 to 31359338 4 - TSS region transcription start site region 107277
Stc2 11 31359441 to 31370061 10620 - protein coding gene stanniocalcin 2
Cpgi2688 11 31368440 to 31370566 2126 CpG island CpG island 2688
Tssr107278 11 31369862 to 31369882 20 - TSS region transcription start site region 107278
Tssr107279 11 31369883 to 31369911 28 - TSS region transcription start site region 107279
Tssr107280 11 31370066 to 31370080 14 - TSS region transcription start site region 107280
Tssr107281 11 31370098 to 31370110 12 - TSS region transcription start site region 107281
Tssr107282 11 31370119 to 31370128 9 - TSS region transcription start site region 107282
Cpgi2689 11 31371269 to 31371869 600 CpG island CpG island 2689
Tssr107283 11 31407868 to 31407869 1 - TSS region transcription start site region 107283
Gm35012 11 31410170 to 31419054 8884 + lncRNA gene predicted gene, 35012
Gm39672 11 31416492 to 31417779 1287 - lncRNA gene predicted gene, 39672
Tssr100768 11 31545800 to 31545806 6 + TSS region transcription start site region 100768
Tssr100769 11 31545870 to 31545891 21 + TSS region transcription start site region 100769
Tssr100770 11 31545893 to 31545898 5 + TSS region transcription start site region 100770
D11Mit134 11 31580603 to 31580711 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 134
Gm35063 11 31617804 to 31619397 1593 + lncRNA gene predicted gene, 35063
Bod1 11 31665181 to 31671885 6704 - protein coding gene biorientation of chromosomes in cell division 1
Cpgi2690 11 31671359 to 31672181 822 CpG island CpG island 2690
Tssr107284 11 31671804 to 31671856 52 - TSS region transcription start site region 107284
Tssr107285 11 31671863 to 31671881 18 - TSS region transcription start site region 107285
Tssr100771 11 31672022 to 31672050 28 + TSS region transcription start site region 100771
Gm38061 11 31698648 to 31699012 364 + unclassified gene predicted gene, 38061
Gm39673 11 31704596 to 31716933 12337 - lncRNA gene predicted gene, 39673
Gm35131 11 31723591 to 31726994 3403 - lncRNA gene predicted gene, 35131
Tssr100772 11 31733319 to 31733326 7 + TSS region transcription start site region 100772
Tssr100773 11 31733984 to 31733988 4 + TSS region transcription start site region 100773
Gm39674 11 31748290 to 31751296 3006 - lncRNA gene predicted gene, 39674