Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:30651173-33411186

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310 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr3456 11 30657364 to 30657365 1 + TSS region transcription start site region 3456
Gm12099 11 30705155 to 30705901 746 - pseudogene predicted gene 12099
Tssr107268 11 30749070 to 30749118 48 - TSS region transcription start site region 107268
Gm12100 11 30750832 to 30756147 5315 + unclassified non-coding RNA gene predicted gene 12100
Gm12101 11 30754572 to 30754961 389 - pseudogene predicted gene 12101
Cpgi2683 11 30754829 to 30755552 723 CpG island CpG island 2683
4930448L02Rik 11 30771292 to 30771673 381 unclassified gene RIKEN cDNA 4930448L02 gene
Cpgi2684 11 30771441 to 30772703 1262 CpG island CpG island 2684
Tssr107269 11 30771660 to 30771679 19 - TSS region transcription start site region 107269
Psme4 11 30771728 to 30880361 108633 + protein coding gene proteasome (prosome, macropain) activator subunit 4
Tssr100752 11 30771745 to 30771792 47 + TSS region transcription start site region 100752
Tssr100753 11 30771795 to 30771812 17 + TSS region transcription start site region 100753
Tssr100754 11 30771815 to 30771818 3 + TSS region transcription start site region 100754
Tssr100755 11 30771833 to 30771842 9 + TSS region transcription start site region 100755
Tssr100756 11 30771843 to 30771854 11 + TSS region transcription start site region 100756
Tssr107270 11 30785663 to 30785667 4 - TSS region transcription start site region 107270
Tssr100757 11 30786716 to 30786720 4 + TSS region transcription start site region 100757
Tssr100758 11 30812478 to 30812493 15 + TSS region transcription start site region 100758
Gm12103 11 30822309 to 30822670 361 - pseudogene predicted gene 12103
Tssr100759 11 30831289 to 30831298 9 + TSS region transcription start site region 100759
Tssr100760 11 30855755 to 30855762 7 + TSS region transcription start site region 100760
Tssr100761 11 30863667 to 30863671 4 + TSS region transcription start site region 100761
Tssr100762 11 30883730 to 30883737 7 + TSS region transcription start site region 100762
Cpgi2685 11 30885161 to 30885928 767 CpG island CpG island 2685
Gpr75 11 30885358 to 30893729 8371 + protein coding gene G protein-coupled receptor 75
Tssr100763 11 30885400 to 30885430 30 + TSS region transcription start site region 100763
Gm12104 11 30906952 to 30907920 968 - pseudogene predicted gene 12104
D11Mit215 11 30909133 to 30909266 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 215
Erlec1 11 30930774 to 30954335 23561 - protein coding gene endoplasmic reticulum lectin 1
Cpgi2686 11 30953789 to 30954742 953 CpG island CpG island 2686
Tssr107271 11 30954080 to 30954143 63 - TSS region transcription start site region 107271
Asb3 11 30954222 to 31102704 148482 + protein coding gene ankyrin repeat and SOCS box-containing 3
Tssr107272 11 30954325 to 30954393 68 - TSS region transcription start site region 107272
Tssr100764 11 30954389 to 30954439 50 + TSS region transcription start site region 100764
Tssr100765 11 30954450 to 30954480 30 + TSS region transcription start site region 100765
Tssr100766 11 30959007 to 30959018 11 + TSS region transcription start site region 100766
Chac2 11 30976707 to 30986350 9643 - protein coding gene ChaC, cation transport regulator 2
Tssr100767 11 30985455 to 30985459 4 + TSS region transcription start site region 100767
Cpgi2687 11 30986103 to 30986348 245 CpG island CpG island 2687
Tssr107273 11 30986246 to 30986257 11 - TSS region transcription start site region 107273
Tssr107274 11 30986264 to 30986296 32 - TSS region transcription start site region 107274
Tssr107275 11 30986297 to 30986325 28 - TSS region transcription start site region 107275
Tssr107276 11 30986326 to 30986372 46 - TSS region transcription start site region 107276
Gm12102 11 31003328 to 31003898 570 - pseudogene predicted gene 12102
A230054M22Rik 11 31103233 to 31105354 2121 unclassified gene RIKEN cDNA A230054M22 gene
Gm12105 11 31120003 to 31120781 778 + pseudogene predicted gene 12105
Gm40822 11 31161932 to 31169846 7914 - lncRNA gene predicted gene, 40822
Gm12106 11 31177818 to 31184374 6556 - pseudogene predicted gene 12106
Gm17332 11 31182376 to 31182462 86 - protein coding gene predicted gene, 17332
Tssr107277 11 31359334 to 31359338 4 - TSS region transcription start site region 107277
Stc2 11 31359441 to 31370061 10620 - protein coding gene stanniocalcin 2
Cpgi2688 11 31368440 to 31370566 2126 CpG island CpG island 2688
Tssr107278 11 31369862 to 31369882 20 - TSS region transcription start site region 107278
Tssr107279 11 31369883 to 31369911 28 - TSS region transcription start site region 107279
Tssr107280 11 31370066 to 31370080 14 - TSS region transcription start site region 107280
Tssr107281 11 31370098 to 31370110 12 - TSS region transcription start site region 107281
Tssr107282 11 31370119 to 31370128 9 - TSS region transcription start site region 107282
Cpgi2689 11 31371269 to 31371869 600 CpG island CpG island 2689
Tssr107283 11 31407868 to 31407869 1 - TSS region transcription start site region 107283
Gm35012 11 31410170 to 31419054 8884 + lncRNA gene predicted gene, 35012
Gm39672 11 31416492 to 31417779 1287 - lncRNA gene predicted gene, 39672
Tssr100768 11 31545800 to 31545806 6 + TSS region transcription start site region 100768
Tssr100769 11 31545870 to 31545891 21 + TSS region transcription start site region 100769
Tssr100770 11 31545893 to 31545898 5 + TSS region transcription start site region 100770
D11Mit134 11 31580603 to 31580711 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 134
Gm35063 11 31617804 to 31619397 1593 + lncRNA gene predicted gene, 35063
Bod1 11 31665181 to 31671885 6704 - protein coding gene biorientation of chromosomes in cell division 1
Cpgi2690 11 31671359 to 31672181 822 CpG island CpG island 2690
Tssr107284 11 31671804 to 31671856 52 - TSS region transcription start site region 107284
Tssr107285 11 31671863 to 31671881 18 - TSS region transcription start site region 107285
Tssr100771 11 31672022 to 31672050 28 + TSS region transcription start site region 100771
Gm38061 11 31698648 to 31699012 364 + unclassified gene predicted gene, 38061
Gm39673 11 31704596 to 31716933 12337 - lncRNA gene predicted gene, 39673
Gm35131 11 31723591 to 31726994 3403 - lncRNA gene predicted gene, 35131
Tssr100772 11 31733319 to 31733326 7 + TSS region transcription start site region 100772
Tssr100773 11 31733984 to 31733988 4 + TSS region transcription start site region 100773
Gm39674 11 31748290 to 31751296 3006 - lncRNA gene predicted gene, 39674
Tssr107286 11 31779459 to 31779503 44 - TSS region transcription start site region 107286
Tssr107287 11 31779628 to 31779632 4 - TSS region transcription start site region 107287
Tssr100774 11 31796433 to 31796461 28 + TSS region transcription start site region 100774
Tssr100775 11 31796508 to 31796517 9 + TSS region transcription start site region 100775
D630024D03Rik 11 31800688 to 31824547 23859 - lincRNA gene RIKEN cDNA D630024D03 gene
Tssr107288 11 31821283 to 31821311 28 - TSS region transcription start site region 107288
Tssr100776 11 31822735 to 31822740 5 + TSS region transcription start site region 100776
Tssr107289 11 31824431 to 31824442 11 - TSS region transcription start site region 107289
Tssr107290 11 31824463 to 31824480 17 - TSS region transcription start site region 107290
Tssr107291 11 31824518 to 31824535 17 - TSS region transcription start site region 107291
Tssr107292 11 31824541 to 31824552 11 - TSS region transcription start site region 107292
Gm39675 11 31830465 to 31837934 7469 - lncRNA gene predicted gene, 39675
Tssr100777 11 31831792 to 31831798 6 + TSS region transcription start site region 100777
Tssr100778 11 31832115 to 31832136 21 + TSS region transcription start site region 100778
Gm12107 11 31832660 to 31838214 5554 + lincRNA gene predicted gene 12107
Tssr100779 11 31832708 to 31832716 8 + TSS region transcription start site region 100779
Tssr100780 11 31851371 to 31851379 8 + TSS region transcription start site region 100780
1700012M20Rik 11 31870096 to 31870744 648 unclassified gene RIKEN cDNA 1700012M20 gene
Cpgi2691 11 31870253 to 31871457 1204 CpG island CpG island 2691
Tssr100781 11 31870868 to 31870900 32 + TSS region transcription start site region 100781
Tssr100782 11 31870901 to 31870923 22 + TSS region transcription start site region 100782
Tssr100783 11 31871373 to 31871399 26 + TSS region transcription start site region 100783
Tssr100784 11 31871411 to 31871420 9 + TSS region transcription start site region 100784
Tssr100785 11 31871502 to 31871513 11 + TSS region transcription start site region 100785
Tssr100786 11 31871522 to 31871533 11 + TSS region transcription start site region 100786
Tssr100787 11 31871560 to 31871598 38 + TSS region transcription start site region 100787
Tssr107293 11 31871612 to 31871640 28 - TSS region transcription start site region 107293
Tssr100788 11 31871665 to 31871675 10 + TSS region transcription start site region 100788
Tssr100789 11 31871684 to 31871710 26 + TSS region transcription start site region 100789
Tssr100790 11 31871810 to 31871822 12 + TSS region transcription start site region 100790
Tssr100791 11 31872100 to 31872104 4 + TSS region transcription start site region 100791
Cpeb4 11 31872211 to 31935634 63423 + protein coding gene cytoplasmic polyadenylation element binding protein 4
Tssr100792 11 31872225 to 31872264 39 + TSS region transcription start site region 100792
Tssr100793 11 31872707 to 31872723 16 + TSS region transcription start site region 100793
Tssr100794 11 31872786 to 31872797 11 + TSS region transcription start site region 100794
Tssr100795 11 31872934 to 31872987 53 + TSS region transcription start site region 100795
Tssr100796 11 31873089 to 31873127 38 + TSS region transcription start site region 100796
Tssr100797 11 31874319 to 31874345 26 + TSS region transcription start site region 100797
Tssr100798 11 31882546 to 31882561 15 + TSS region transcription start site region 100798
E130106K03Rik 11 31900776 to 31906289 5513 unclassified gene RIKEN cDNA E130106K03 gene
Tssr100799 11 31900790 to 31900794 4 + TSS region transcription start site region 100799
Tssr100800 11 31910779 to 31910783 4 + TSS region transcription start site region 100800
Gm18743 11 31912927 to 31913461 534 - pseudogene predicted gene, 18743
Tssr100801 11 31913305 to 31913309 4 + TSS region transcription start site region 100801
Tssr100802 11 31928116 to 31928137 21 + TSS region transcription start site region 100802
Tssr100803 11 31931782 to 31931804 22 + TSS region transcription start site region 100803
Tssr100804 11 31933344 to 31933358 14 + TSS region transcription start site region 100804
Tssr100805 11 31933659 to 31933674 15 + TSS region transcription start site region 100805
Tssr100806 11 31935044 to 31935069 25 + TSS region transcription start site region 100806
Tssr100807 11 31935109 to 31935132 23 + TSS region transcription start site region 100807
Gm19020 11 31956357 to 31957077 720 - pseudogene predicted gene, 19020
Cpgi2692 11 31965502 to 31966169 667 CpG island CpG island 2692
Tssr100808 11 31965542 to 31965597 55 + TSS region transcription start site region 100808
4930524B15Rik 11 31965592 to 31979651 14059 + protein coding gene RIKEN cDNA 4930524B15 gene
Tssr100809 11 31965604 to 31965611 7 + TSS region transcription start site region 100809
Gm35267 11 31977886 to 31978354 468 - pseudogene predicted gene, 35267
Cpgi2693 11 32000317 to 32000582 265 CpG island CpG island 2693
Tssr100810 11 32000418 to 32000445 27 + TSS region transcription start site region 100810
Tssr100811 11 32000452 to 32000470 18 + TSS region transcription start site region 100811
Nsg2 11 32000463 to 32059202 58739 + protein coding gene neuron specific gene family member 2
Tssr100812 11 32000496 to 32000507 11 + TSS region transcription start site region 100812
Tssr100813 11 32001270 to 32001278 8 + TSS region transcription start site region 100813
Tssr100814 11 32001654 to 32001678 24 + TSS region transcription start site region 100814
Tssr100815 11 32001686 to 32001723 37 + TSS region transcription start site region 100815
Tssr100816 11 32001782 to 32001793 11 + TSS region transcription start site region 100816
Tssr100817 11 32001842 to 32001853 11 + TSS region transcription start site region 100817
Tssr3457 11 32024680 to 32024691 11 + TSS region transcription start site region 3457
Tssr100818 11 32024695 to 32024708 13 + TSS region transcription start site region 100818
Tssr100819 11 32024712 to 32024739 27 + TSS region transcription start site region 100819
Tssr100820 11 32024772 to 32024800 28 + TSS region transcription start site region 100820
Tssr100821 11 32024819 to 32024835 16 + TSS region transcription start site region 100821
Tssr100822 11 32024848 to 32024866 18 + TSS region transcription start site region 100822
Tssr100823 11 32024868 to 32024886 18 + TSS region transcription start site region 100823
Tssr100824 11 32031173 to 32031186 13 + TSS region transcription start site region 100824
Tssr100825 11 32057669 to 32057683 14 + TSS region transcription start site region 100825
Tssr100826 11 32057762 to 32057784 22 + TSS region transcription start site region 100826
Tssr100827 11 32058842 to 32058863 21 + TSS region transcription start site region 100827
Tssr100828 11 32058889 to 32058900 11 + TSS region transcription start site region 100828
Gm12108 11 32095261 to 32101228 5967 - lincRNA gene predicted gene 12108
Tssr3458 11 32103111 to 32103113 2 - TSS region transcription start site region 3458
Gm39676 11 32125827 to 32136643 10816 - lncRNA gene predicted gene, 39676
Tssr107294 11 32136107 to 32136145 38 - TSS region transcription start site region 107294
Gm40823 11 32161174 to 32173939 12765 + lncRNA gene predicted gene, 40823
Cpgi2694 11 32162170 to 32162508 338 CpG island CpG island 2694
Gm12109 11 32185005 to 32185701 696 + pseudogene predicted gene 12109
Il9r 11 32187541 to 32200279 12738 - protein coding gene interleukin 9 receptor
Tssr107295 11 32199260 to 32199297 37 - TSS region transcription start site region 107295
Tssr107296 11 32199337 to 32199352 15 - TSS region transcription start site region 107296
Tssr107297 11 32199369 to 32199380 11 - TSS region transcription start site region 107297
Tssr107298 11 32200248 to 32200271 23 - TSS region transcription start site region 107298
Tssr107299 11 32200273 to 32200286 13 - TSS region transcription start site region 107299
Tssr107300 11 32200466 to 32200472 6 - TSS region transcription start site region 107300
Cpgi2695 11 32205021 to 32205856 835 CpG island CpG island 2695
Tssr100829 11 32205411 to 32205481 70 + TSS region transcription start site region 100829
Snrnp25 11 32205415 to 32208984 3569 + protein coding gene small nuclear ribonucleoprotein 25 (U11/U12)
Tssr100830 11 32205483 to 32205504 21 + TSS region transcription start site region 100830
Tssr107301 11 32205687 to 32205692 5 - TSS region transcription start site region 107301
Rhbdf1 11 32209585 to 32222300 12715 - protein coding gene rhomboid 5 homolog 1
Cpgi2696 11 32213147 to 32213525 378 CpG island CpG island 2696
Cpgi2697 11 32221260 to 32222949 1689 CpG island CpG island 2697
Tssr100831 11 32221417 to 32221435 18 + TSS region transcription start site region 100831
Tssr107302 11 32222233 to 32222315 82 - TSS region transcription start site region 107302
Cpgi2698 11 32226238 to 32226954 716 CpG island CpG island 2698
Tssr100832 11 32226481 to 32226545 64 + TSS region transcription start site region 100832
Mpg 11 32226505 to 32232700 6195 + protein coding gene N-methylpurine-DNA glycosylase
Nprl3 11 32231963 to 32267707 35744 - protein coding gene nitrogen permease regulator-like 3
Tssr3459 11 32237238 to 32237239 1 - TSS region transcription start site region 3459
Tssr107303 11 32265424 to 32265428 4 - TSS region transcription start site region 107303
Cpgi2699 11 32267209 to 32268170 961 CpG island CpG island 2699
Tssr107304 11 32267583 to 32267677 94 - TSS region transcription start site region 107304
Tssr100833 11 32267705 to 32267748 43 + TSS region transcription start site region 100833
Tssr100834 11 32276593 to 32276609 16 + TSS region transcription start site region 100834
Hba-x 11 32276600 to 32278116 1516 + protein coding gene hemoglobin X, alpha-like embryonic chain in Hba complex
D11Mit53 11 32277092 to 32277321 229 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 53
Tssr100835 11 32277293 to 32277304 11 + TSS region transcription start site region 100835
Tssr100836 11 32277564 to 32277584 20 + TSS region transcription start site region 100836
Tssr100837 11 32277586 to 32277613 27 + TSS region transcription start site region 100837
Cpgi2700 11 32277693 to 32278053 360 CpG island CpG island 2700
Tssr107305 11 32277763 to 32277774 11 - TSS region transcription start site region 107305
Tssr100838 11 32277907 to 32277928 21 + TSS region transcription start site region 100838
Tssr107306 11 32278001 to 32278041 40 - TSS region transcription start site region 107306
Hba-a1 11 32283672 to 32284486 814 + protein coding gene hemoglobin alpha, adult chain 1
Tssr100839 11 32284304 to 32284343 39 + TSS region transcription start site region 100839