Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:29890427-30821542

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eml6 11 29743048 to 30026033 282985 - protein coding gene echinoderm microtubule associated protein like 6
Tssr107223 11 29944789 to 29944798 9 - TSS region transcription start site region 107223
Gm12095 11 29982414 to 29983229 815 + pseudogene predicted gene 12095
Cpgi2678 11 30024390 to 30024991 601 CpG island CpG island 2678
Cpgi2679 11 30025638 to 30026343 705 CpG island CpG island 2679
Tssr107224 11 30025915 to 30025955 40 - TSS region transcription start site region 107224
Tssr107225 11 30078913 to 30078915 2 - TSS region transcription start site region 107225
Sptbn1 11 30099395 to 30268175 168780 - protein coding gene spectrin beta, non-erythrocytic 1
Tssr107226 11 30099463 to 30099478 15 - TSS region transcription start site region 107226
Tssr107227 11 30100318 to 30100322 4 - TSS region transcription start site region 107227
Tssr107228 11 30100361 to 30100364 3 - TSS region transcription start site region 107228
Tssr107229 11 30100408 to 30100499 91 - TSS region transcription start site region 107229
Gm29237 11 30106394 to 30108120 1726 + antisense lncRNA gene predicted gene 29237
Tssr107230 11 30107361 to 30107365 4 - TSS region transcription start site region 107230
Tssr107231 11 30114855 to 30114874 19 - TSS region transcription start site region 107231
Tssr100747 11 30137259 to 30137296 37 + TSS region transcription start site region 100747
Tssr107232 11 30138828 to 30138841 13 - TSS region transcription start site region 107232
Tssr100748 11 30139277 to 30139301 24 + TSS region transcription start site region 100748
Tssr3455 11 30139441 to 30139452 11 - TSS region transcription start site region 3455
Tssr107233 11 30150075 to 30150079 4 - TSS region transcription start site region 107233
Tssr100749 11 30153088 to 30153093 5 + TSS region transcription start site region 100749
Tssr107234 11 30159546 to 30159557 11 - TSS region transcription start site region 107234
Tssr107235 11 30159649 to 30159660 11 - TSS region transcription start site region 107235
Tssr107236 11 30159661 to 30159672 11 - TSS region transcription start site region 107236
Tssr107237 11 30159687 to 30159699 12 - TSS region transcription start site region 107237
Tssr107238 11 30160999 to 30161004 5 - TSS region transcription start site region 107238
Cpgi2680 11 30197687 to 30198623 936 CpG island CpG island 2680
Tssr107239 11 30197829 to 30197850 21 - TSS region transcription start site region 107239
Tssr107240 11 30197856 to 30197896 40 - TSS region transcription start site region 107240
Tssr107241 11 30197900 to 30197962 62 - TSS region transcription start site region 107241
Tssr107242 11 30197993 to 30198009 16 - TSS region transcription start site region 107242
Tssr107243 11 30198080 to 30198095 15 - TSS region transcription start site region 107243
Tssr107244 11 30198205 to 30198226 21 - TSS region transcription start site region 107244
Tssr107245 11 30198232 to 30198261 29 - TSS region transcription start site region 107245
Tssr107246 11 30212936 to 30212940 4 - TSS region transcription start site region 107246
Tssr107247 11 30213603 to 30213607 4 - TSS region transcription start site region 107247
Tssr100750 11 30221640 to 30221646 6 + TSS region transcription start site region 100750
Tssr107248 11 30243050 to 30243055 5 - TSS region transcription start site region 107248
Tssr107249 11 30248502 to 30248509 7 - TSS region transcription start site region 107249
Tssr107250 11 30253416 to 30253420 4 - TSS region transcription start site region 107250
Tssr107251 11 30256042 to 30256051 9 - TSS region transcription start site region 107251
Cpgi2681 11 30266915 to 30268971 2056 CpG island CpG island 2681
Gm8098 11 30267464 to 30280491 13027 + unclassified non-coding RNA gene predicted gene 8098
Tssr107252 11 30267616 to 30267628 12 - TSS region transcription start site region 107252
Tssr107253 11 30268116 to 30268123 7 - TSS region transcription start site region 107253
Tssr107254 11 30268137 to 30268162 25 - TSS region transcription start site region 107254
Tssr107255 11 30268171 to 30268191 20 - TSS region transcription start site region 107255
Tssr100751 11 30268295 to 30268336 41 + TSS region transcription start site region 100751
Tssr107256 11 30279442 to 30279465 23 - TSS region transcription start site region 107256
Gm40820 11 30314938 to 30333158 18220 + lncRNA gene predicted gene, 40820
Gm8102 11 30355427 to 30356542 1115 + pseudogene predicted gene 8102
Gm34695 11 30422226 to 30427093 4867 + lncRNA gene predicted gene, 34695
4930505A04Rik 11 30426006 to 30471827 45821 - protein coding gene RIKEN cDNA 4930505A04 gene
Tssr107257 11 30471792 to 30471820 28 - TSS region transcription start site region 107257
Tssr107258 11 30471855 to 30471860 5 - TSS region transcription start site region 107258
Tssr107259 11 30471874 to 30471886 12 - TSS region transcription start site region 107259
Acyp2 11 30505991 to 30649587 143596 - protein coding gene acylphosphatase 2, muscle type
Gm12096 11 30528295 to 30529398 1103 + pseudogene predicted gene 12096
Gm12098 11 30568182 to 30568898 716 - pseudogene predicted gene 12098
Gm12097 11 30572791 to 30574454 1663 - pseudogene predicted gene 12097
Tssr107260 11 30573115 to 30573144 29 - TSS region transcription start site region 107260
Tssr107261 11 30576918 to 30576922 4 - TSS region transcription start site region 107261
Cpgi2682 11 30649013 to 30649642 629 CpG island CpG island 2682
Tssr107262 11 30649364 to 30649374 10 - TSS region transcription start site region 107262
Tssr107263 11 30649375 to 30649413 38 - TSS region transcription start site region 107263
Tssr107264 11 30649417 to 30649445 28 - TSS region transcription start site region 107264
Tssr107265 11 30649453 to 30649470 17 - TSS region transcription start site region 107265
Tssr107266 11 30649485 to 30649498 13 - TSS region transcription start site region 107266
Tssr107267 11 30649510 to 30649523 13 - TSS region transcription start site region 107267
Tssr3456 11 30657364 to 30657365 1 + TSS region transcription start site region 3456
Gm12099 11 30705155 to 30705901 746 - pseudogene predicted gene 12099
Tssr107268 11 30749070 to 30749118 48 - TSS region transcription start site region 107268
Gm12100 11 30750832 to 30756147 5315 + unclassified non-coding RNA gene predicted gene 12100
Gm12101 11 30754572 to 30754961 389 - pseudogene predicted gene 12101
Cpgi2683 11 30754829 to 30755552 723 CpG island CpG island 2683
4930448L02Rik 11 30771292 to 30771673 381 unclassified gene RIKEN cDNA 4930448L02 gene
Cpgi2684 11 30771441 to 30772703 1262 CpG island CpG island 2684
Tssr107269 11 30771660 to 30771679 19 - TSS region transcription start site region 107269
Psme4 11 30771728 to 30880361 108633 + protein coding gene proteasome (prosome, macropain) activator subunit 4
Tssr100752 11 30771745 to 30771792 47 + TSS region transcription start site region 100752
Tssr100753 11 30771795 to 30771812 17 + TSS region transcription start site region 100753
Tssr100754 11 30771815 to 30771818 3 + TSS region transcription start site region 100754
Tssr100755 11 30771833 to 30771842 9 + TSS region transcription start site region 100755
Tssr100756 11 30771843 to 30771854 11 + TSS region transcription start site region 100756
Tssr107270 11 30785663 to 30785667 4 - TSS region transcription start site region 107270
Tssr100757 11 30786716 to 30786720 4 + TSS region transcription start site region 100757
Tssr100758 11 30812478 to 30812493 15 + TSS region transcription start site region 100758