Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:2968865-3289174

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr99990 11 3100424 to 3100465 41 + TSS region transcription start site region 99990
Tssr99991 11 3101245 to 3101286 41 + TSS region transcription start site region 99991
Tssr106439 11 3101280 to 3101289 9 - TSS region transcription start site region 106439
Tssr99992 11 3101412 to 3101433 21 + TSS region transcription start site region 99992
Tssr99993 11 3101486 to 3101499 13 + TSS region transcription start site region 99993
Tssr99994 11 3101724 to 3101736 12 + TSS region transcription start site region 99994
Cpgi2429 11 3101728 to 3102083 355 CpG island CpG island 2429
Tssr99995 11 3101951 to 3101961 10 + TSS region transcription start site region 99995
Tssr99996 11 3102273 to 3102276 3 + TSS region transcription start site region 99996
Tssr99997 11 3103532 to 3103550 18 + TSS region transcription start site region 99997
Tssr99998 11 3104244 to 3104287 43 + TSS region transcription start site region 99998
Tssr99999 11 3104716 to 3104727 11 + TSS region transcription start site region 99999
Tssr106440 11 3104756 to 3104767 11 - TSS region transcription start site region 106440
Tssr106441 11 3104783 to 3104799 16 - TSS region transcription start site region 106441
Tssr100000 11 3105050 to 3105062 12 + TSS region transcription start site region 100000
Tssr100001 11 3105170 to 3105179 9 + TSS region transcription start site region 100001
Cpgi2430 11 3105401 to 3105602 201 CpG island CpG island 2430
Tssr100002 11 3105538 to 3105542 4 + TSS region transcription start site region 100002
Tssr100003 11 3105664 to 3105681 17 + TSS region transcription start site region 100003
Cpgi2431 11 3123264 to 3124136 872 CpG island CpG island 2431
Tssr106442 11 3123905 to 3123920 15 - TSS region transcription start site region 106442
Tssr100004 11 3123999 to 3124031 32 + TSS region transcription start site region 100004
Tssr100005 11 3124043 to 3124054 11 + TSS region transcription start site region 100005
Pisd-ps1 11 3125904 to 3131004 5100 + pseudogene phosphatidylserine decarboxylase, pseudogene 1
Cpgi2432 11 3127139 to 3127599 460 CpG island CpG island 2432
Cpgi2433 11 3128865 to 3129174 309 CpG island CpG island 2433
Cpgi2434 11 3129531 to 3130076 545 CpG island CpG island 2434
Cpgi2435 11 3130745 to 3131132 387 CpG island CpG island 2435
Tssr100006 11 3131098 to 3131110 12 + TSS region transcription start site region 100006
Sfi1 11 3131850 to 3193463 61613 - protein coding gene Sfi1 homolog, spindle assembly associated (yeast)
Cpgi2436 11 3131947 to 3137915 5968 CpG island CpG island 2436
Gm33862 11 3137121 to 3139791 2670 + lncRNA gene predicted gene, 33862
Cpgi2438 11 3139221 to 3140243 1022 CpG island CpG island 2438
Gm11399 11 3142048 to 3143363 1315 + antisense lncRNA gene predicted gene 11399
Cpgi2440 11 3142049 to 3146471 4422 CpG island CpG island 2440
Tssr106443 11 3146351 to 3146392 41 - TSS region transcription start site region 106443
Tssr100007 11 3147562 to 3147573 11 + TSS region transcription start site region 100007
Tssr100008 11 3148817 to 3148819 2 + TSS region transcription start site region 100008
Tssr106444 11 3148908 to 3148916 8 - TSS region transcription start site region 106444
Cpgi2444 11 3149592 to 3151583 1991 CpG island CpG island 2444
Gm11400 11 3149742 to 3150955 1213 - pseudogene predicted gene 11400
Tssr106445 11 3150339 to 3150369 30 - TSS region transcription start site region 106445
Tssr106446 11 3151426 to 3151459 33 - TSS region transcription start site region 106446
Cpgi2445 11 3152102 to 3153870 1768 CpG island CpG island 2445
Tssr106447 11 3156341 to 3156344 3 - TSS region transcription start site region 106447
Cpgi2448 11 3156421 to 3158980 2559 CpG island CpG island 2448
Tssr100009 11 3163911 to 3163929 18 + TSS region transcription start site region 100009
Tssr100010 11 3163954 to 3164001 47 + TSS region transcription start site region 100010
Cpgi2452 11 3165381 to 3165986 605 CpG island CpG island 2452
Cpgi2457 11 3172306 to 3172581 275 CpG island CpG island 2457
Tssr106448 11 3172795 to 3172797 2 - TSS region transcription start site region 106448
Cpgi2458 11 3173264 to 3173806 542 CpG island CpG island 2458
Tssr106449 11 3173319 to 3173329 10 - TSS region transcription start site region 106449
Cpgi2461 11 3176616 to 3178184 1568 CpG island CpG island 2461
Cpgi2464 11 3183767 to 3184055 288 CpG island CpG island 2464
Cpgi2468 11 3188729 to 3189425 696 CpG island CpG island 2468
Cpgi2469 11 3192018 to 3194670 2652 CpG island CpG island 2469
9530037G02Rik 11 3193080 to 3194309 1229 unclassified gene RIKEN cDNA 9530037G02 gene
Tssr106450 11 3193127 to 3193173 46 - TSS region transcription start site region 106450
Tssr106451 11 3193388 to 3193450 62 - TSS region transcription start site region 106451
Tssr100011 11 3193490 to 3193510 20 + TSS region transcription start site region 100011
Gm12735 11 3193516 to 3194263 747 - antisense lncRNA gene predicted gene 12735
Tssr100012 11 3193562 to 3193578 16 + TSS region transcription start site region 100012
Fau-ps2 11 3196390 to 3196727 337 - pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2
Tssr106452 11 3198517 to 3198561 44 - TSS region transcription start site region 106452
Tssr100013 11 3198582 to 3198608 26 + TSS region transcription start site region 100013
Cpgi2474 11 3202112 to 3203348 1236 CpG island CpG island 2474
Eif4enif1 11 3202392 to 3244588 42196 + protein coding gene eukaryotic translation initiation factor 4E nuclear import factor 1
Tssr100014 11 3202612 to 3202654 42 + TSS region transcription start site region 100014
Tssr100015 11 3202684 to 3202729 45 + TSS region transcription start site region 100015
Tssr100016 11 3202876 to 3202904 28 + TSS region transcription start site region 100016
Tssr100017 11 3202908 to 3202933 25 + TSS region transcription start site region 100017
Tssr106453 11 3203333 to 3203360 27 - TSS region transcription start site region 106453
Tssr100018 11 3223379 to 3223382 3 + TSS region transcription start site region 100018
Tssr100019 11 3233984 to 3233988 4 + TSS region transcription start site region 100019
Drg1 11 3249919 to 3266652 16733 - protein coding gene developmentally regulated GTP binding protein 1
Cpgi2475 11 3265825 to 3266952 1127 CpG island CpG island 2475
Tssr106454 11 3266322 to 3266333 11 - TSS region transcription start site region 106454
Tssr106455 11 3266342 to 3266353 11 - TSS region transcription start site region 106455
Tssr106456 11 3266377 to 3266423 46 - TSS region transcription start site region 106456
Tssr100020 11 3266506 to 3266534 28 + TSS region transcription start site region 100020
Cpgi2476 11 3288482 to 3291899 3417 CpG island CpG island 2476
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Tssr100021 11 3289168 to 3289194 26 + TSS region transcription start site region 100021