Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:29503502-30993509

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc88a 11 29373658 to 29510808 137150 + protein coding gene coiled coil domain containing 88A
Tssr100714 11 29503977 to 29503989 12 + TSS region transcription start site region 100714
Tssr100715 11 29505560 to 29505571 11 + TSS region transcription start site region 100715
Tssr100716 11 29507692 to 29507703 11 + TSS region transcription start site region 100716
Tssr100717 11 29508479 to 29508521 42 + TSS region transcription start site region 100717
Tssr100718 11 29508600 to 29508613 13 + TSS region transcription start site region 100718
Prorsd1 11 29511757 to 29515033 3276 - protein coding gene prolyl-tRNA synthetase domain containing 1
Cpgi2673 11 29514763 to 29515311 548 CpG island CpG island 2673
Tssr107212 11 29515017 to 29515040 23 - TSS region transcription start site region 107212
Gm12089 11 29515086 to 29517355 2269 + antisense lncRNA gene predicted gene 12089
Cpgi2674 11 29526054 to 29526726 672 CpG island CpG island 2674
Tssr107213 11 29526343 to 29526379 36 - TSS region transcription start site region 107213
Tssr100719 11 29526407 to 29526420 13 + TSS region transcription start site region 100719
Mtif2 11 29526408 to 29545279 18871 + protein coding gene mitochondrial translational initiation factor 2
Tssr100720 11 29526423 to 29526474 51 + TSS region transcription start site region 100720
Rps27a 11 29545842 to 29548040 2198 - protein coding gene ribosomal protein S27A
Cpgi2675 11 29547320 to 29548528 1208 CpG island CpG island 2675
Tssr107214 11 29547361 to 29547364 3 - TSS region transcription start site region 107214
Tssr107215 11 29547803 to 29547812 9 - TSS region transcription start site region 107215
Tssr107216 11 29547820 to 29547870 50 - TSS region transcription start site region 107216
Tssr107217 11 29547871 to 29547878 7 - TSS region transcription start site region 107217
Tssr107218 11 29547906 to 29547917 11 - TSS region transcription start site region 107218
Clhc1 11 29547950 to 29578360 30410 + protein coding gene clathrin heavy chain linker domain containing 1
Tssr100721 11 29548209 to 29548255 46 + TSS region transcription start site region 100721
Tssr100722 11 29548365 to 29548403 38 + TSS region transcription start site region 100722
Tssr107219 11 29548494 to 29548512 18 - TSS region transcription start site region 107219
Gm12090 11 29552082 to 29553010 928 - pseudogene predicted gene 12090
Gm12088 11 29595787 to 29597700 1913 + lincRNA gene predicted gene 12088
Gm12091 11 29601784 to 29602613 829 - pseudogene predicted gene 12091
Gm12092 11 29612324 to 29645509 33185 - lincRNA gene predicted gene 12092
Gm12093 11 29688668 to 29689798 1130 - pseudogene predicted gene 12093
Tssr100723 11 29692312 to 29692328 16 + TSS region transcription start site region 100723
Cpgi2676 11 29692701 to 29694167 1466 CpG island CpG island 2676
Tssr100724 11 29692937 to 29692997 60 + TSS region transcription start site region 100724
Rtn4 11 29692947 to 29744331 51384 + protein coding gene reticulon 4
Tssr100725 11 29693004 to 29693015 11 + TSS region transcription start site region 100725
Tssr100726 11 29693033 to 29693047 14 + TSS region transcription start site region 100726
Tssr100727 11 29693159 to 29693168 9 + TSS region transcription start site region 100727
Tssr100728 11 29704277 to 29704284 7 + TSS region transcription start site region 100728
Tssr100729 11 29706788 to 29706818 30 + TSS region transcription start site region 100729
Tssr100730 11 29706996 to 29707022 26 + TSS region transcription start site region 100730
Tssr100731 11 29707283 to 29707295 12 + TSS region transcription start site region 100731
Tssr100732 11 29707397 to 29707416 19 + TSS region transcription start site region 100732
Tssr100733 11 29707733 to 29707758 25 + TSS region transcription start site region 100733
Tssr100734 11 29710813 to 29710829 16 + TSS region transcription start site region 100734
Tssr100735 11 29712813 to 29712819 6 + TSS region transcription start site region 100735
Tssr100736 11 29715691 to 29715703 12 + TSS region transcription start site region 100736
Tssr100737 11 29718697 to 29718753 56 + TSS region transcription start site region 100737
Tssr100738 11 29718781 to 29718782 1 + TSS region transcription start site region 100738
Tssr100739 11 29718785 to 29718791 6 + TSS region transcription start site region 100739
Tssr100740 11 29718795 to 29718839 44 + TSS region transcription start site region 100740
Tssr100741 11 29719130 to 29719157 27 + TSS region transcription start site region 100741
Tssr100742 11 29731501 to 29731507 6 + TSS region transcription start site region 100742
Tssr100743 11 29741459 to 29741482 23 + TSS region transcription start site region 100743
Tssr100744 11 29742083 to 29742143 60 + TSS region transcription start site region 100744
Tssr100745 11 29742348 to 29742406 58 + TSS region transcription start site region 100745
Tssr107220 11 29742912 to 29742916 4 - TSS region transcription start site region 107220
Eml6 11 29743048 to 30026033 282985 - protein coding gene echinoderm microtubule associated protein like 6
Gm39671 11 29808889 to 29822298 13409 + lncRNA gene predicted gene, 39671
Tssr100746 11 29808903 to 29808925 22 + TSS region transcription start site region 100746
4931440F15Rik 11 29822395 to 29825668 3273 - protein coding gene RIKEN cDNA 4931440F15 gene
Cpgi2677 11 29824614 to 29825790 1176 CpG island CpG island 2677
Tssr107221 11 29825649 to 29825680 31 - TSS region transcription start site region 107221
Gm12094 11 29840375 to 29840846 471 + pseudogene predicted gene 12094
Gm22588 11 29849461 to 29849600 139 + snoRNA gene predicted gene, 22588
Tssr3454 11 29862506 to 29862512 6 + TSS region transcription start site region 3454
Tssr107222 11 29879760 to 29879781 21 - TSS region transcription start site region 107222
Tssr107223 11 29944789 to 29944798 9 - TSS region transcription start site region 107223
Gm12095 11 29982414 to 29983229 815 + pseudogene predicted gene 12095
Cpgi2678 11 30024390 to 30024991 601 CpG island CpG island 2678
Cpgi2679 11 30025638 to 30026343 705 CpG island CpG island 2679
Tssr107224 11 30025915 to 30025955 40 - TSS region transcription start site region 107224
Tssr107225 11 30078913 to 30078915 2 - TSS region transcription start site region 107225
Sptbn1 11 30099395 to 30268175 168780 - protein coding gene spectrin beta, non-erythrocytic 1
Tssr107226 11 30099463 to 30099478 15 - TSS region transcription start site region 107226
Tssr107227 11 30100318 to 30100322 4 - TSS region transcription start site region 107227
Tssr107228 11 30100361 to 30100364 3 - TSS region transcription start site region 107228
Tssr107229 11 30100408 to 30100499 91 - TSS region transcription start site region 107229
Gm29237 11 30106394 to 30108120 1726 + antisense lncRNA gene predicted gene 29237
Tssr107230 11 30107361 to 30107365 4 - TSS region transcription start site region 107230
Tssr107231 11 30114855 to 30114874 19 - TSS region transcription start site region 107231
Tssr100747 11 30137259 to 30137296 37 + TSS region transcription start site region 100747
Tssr107232 11 30138828 to 30138841 13 - TSS region transcription start site region 107232
Tssr100748 11 30139277 to 30139301 24 + TSS region transcription start site region 100748
Tssr3455 11 30139441 to 30139452 11 - TSS region transcription start site region 3455
Tssr107233 11 30150075 to 30150079 4 - TSS region transcription start site region 107233
Tssr100749 11 30153088 to 30153093 5 + TSS region transcription start site region 100749
Tssr107234 11 30159546 to 30159557 11 - TSS region transcription start site region 107234
Tssr107235 11 30159649 to 30159660 11 - TSS region transcription start site region 107235
Tssr107236 11 30159661 to 30159672 11 - TSS region transcription start site region 107236
Tssr107237 11 30159687 to 30159699 12 - TSS region transcription start site region 107237
Tssr107238 11 30160999 to 30161004 5 - TSS region transcription start site region 107238
Cpgi2680 11 30197687 to 30198623 936 CpG island CpG island 2680
Tssr107239 11 30197829 to 30197850 21 - TSS region transcription start site region 107239
Tssr107240 11 30197856 to 30197896 40 - TSS region transcription start site region 107240
Tssr107241 11 30197900 to 30197962 62 - TSS region transcription start site region 107241
Tssr107242 11 30197993 to 30198009 16 - TSS region transcription start site region 107242
Tssr107243 11 30198080 to 30198095 15 - TSS region transcription start site region 107243
Tssr107244 11 30198205 to 30198226 21 - TSS region transcription start site region 107244
Tssr107245 11 30198232 to 30198261 29 - TSS region transcription start site region 107245
Tssr107246 11 30212936 to 30212940 4 - TSS region transcription start site region 107246
Tssr107247 11 30213603 to 30213607 4 - TSS region transcription start site region 107247
Tssr100750 11 30221640 to 30221646 6 + TSS region transcription start site region 100750
Tssr107248 11 30243050 to 30243055 5 - TSS region transcription start site region 107248
Tssr107249 11 30248502 to 30248509 7 - TSS region transcription start site region 107249
Tssr107250 11 30253416 to 30253420 4 - TSS region transcription start site region 107250
Tssr107251 11 30256042 to 30256051 9 - TSS region transcription start site region 107251
Cpgi2681 11 30266915 to 30268971 2056 CpG island CpG island 2681
Gm8098 11 30267464 to 30280491 13027 + unclassified non-coding RNA gene predicted gene 8098
Tssr107252 11 30267616 to 30267628 12 - TSS region transcription start site region 107252
Tssr107253 11 30268116 to 30268123 7 - TSS region transcription start site region 107253
Tssr107254 11 30268137 to 30268162 25 - TSS region transcription start site region 107254
Tssr107255 11 30268171 to 30268191 20 - TSS region transcription start site region 107255
Tssr100751 11 30268295 to 30268336 41 + TSS region transcription start site region 100751
Tssr107256 11 30279442 to 30279465 23 - TSS region transcription start site region 107256
Gm40820 11 30314938 to 30333158 18220 + lncRNA gene predicted gene, 40820
Gm8102 11 30355427 to 30356542 1115 + pseudogene predicted gene 8102
Gm34695 11 30422226 to 30427093 4867 + lncRNA gene predicted gene, 34695
4930505A04Rik 11 30426006 to 30471827 45821 - protein coding gene RIKEN cDNA 4930505A04 gene
Tssr107257 11 30471792 to 30471820 28 - TSS region transcription start site region 107257
Tssr107258 11 30471855 to 30471860 5 - TSS region transcription start site region 107258
Tssr107259 11 30471874 to 30471886 12 - TSS region transcription start site region 107259
Acyp2 11 30505991 to 30649587 143596 - protein coding gene acylphosphatase 2, muscle type
Gm12096 11 30528295 to 30529398 1103 + pseudogene predicted gene 12096
Gm12098 11 30568182 to 30568898 716 - pseudogene predicted gene 12098
Gm12097 11 30572791 to 30574454 1663 - pseudogene predicted gene 12097
Tssr107260 11 30573115 to 30573144 29 - TSS region transcription start site region 107260
Tssr107261 11 30576918 to 30576922 4 - TSS region transcription start site region 107261
Cpgi2682 11 30649013 to 30649642 629 CpG island CpG island 2682
Tssr107262 11 30649364 to 30649374 10 - TSS region transcription start site region 107262
Tssr107263 11 30649375 to 30649413 38 - TSS region transcription start site region 107263
Tssr107264 11 30649417 to 30649445 28 - TSS region transcription start site region 107264
Tssr107265 11 30649453 to 30649470 17 - TSS region transcription start site region 107265
Tssr107266 11 30649485 to 30649498 13 - TSS region transcription start site region 107266
Tssr107267 11 30649510 to 30649523 13 - TSS region transcription start site region 107267
Tssr3456 11 30657364 to 30657365 1 + TSS region transcription start site region 3456
Gm12099 11 30705155 to 30705901 746 - pseudogene predicted gene 12099
Tssr107268 11 30749070 to 30749118 48 - TSS region transcription start site region 107268
Gm12100 11 30750832 to 30756147 5315 + unclassified non-coding RNA gene predicted gene 12100
Gm12101 11 30754572 to 30754961 389 - pseudogene predicted gene 12101
Cpgi2683 11 30754829 to 30755552 723 CpG island CpG island 2683
4930448L02Rik 11 30771292 to 30771673 381 unclassified gene RIKEN cDNA 4930448L02 gene
Cpgi2684 11 30771441 to 30772703 1262 CpG island CpG island 2684
Tssr107269 11 30771660 to 30771679 19 - TSS region transcription start site region 107269
Psme4 11 30771728 to 30880361 108633 + protein coding gene proteasome (prosome, macropain) activator subunit 4
Tssr100752 11 30771745 to 30771792 47 + TSS region transcription start site region 100752
Tssr100753 11 30771795 to 30771812 17 + TSS region transcription start site region 100753
Tssr100754 11 30771815 to 30771818 3 + TSS region transcription start site region 100754
Tssr100755 11 30771833 to 30771842 9 + TSS region transcription start site region 100755
Tssr100756 11 30771843 to 30771854 11 + TSS region transcription start site region 100756
Tssr107270 11 30785663 to 30785667 4 - TSS region transcription start site region 107270
Tssr100757 11 30786716 to 30786720 4 + TSS region transcription start site region 100757
Tssr100758 11 30812478 to 30812493 15 + TSS region transcription start site region 100758
Gm12103 11 30822309 to 30822670 361 - pseudogene predicted gene 12103
Tssr100759 11 30831289 to 30831298 9 + TSS region transcription start site region 100759
Tssr100760 11 30855755 to 30855762 7 + TSS region transcription start site region 100760
Tssr100761 11 30863667 to 30863671 4 + TSS region transcription start site region 100761
Tssr100762 11 30883730 to 30883737 7 + TSS region transcription start site region 100762
Cpgi2685 11 30885161 to 30885928 767 CpG island CpG island 2685
Gpr75 11 30885358 to 30893729 8371 + protein coding gene G protein-coupled receptor 75
Tssr100763 11 30885400 to 30885430 30 + TSS region transcription start site region 100763
Gm12104 11 30906952 to 30907920 968 - pseudogene predicted gene 12104
D11Mit215 11 30909133 to 30909266 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 215
Erlec1 11 30930774 to 30954335 23561 - protein coding gene endoplasmic reticulum lectin 1
Cpgi2686 11 30953789 to 30954742 953 CpG island CpG island 2686
Tssr107271 11 30954080 to 30954143 63 - TSS region transcription start site region 107271
Asb3 11 30954222 to 31102704 148482 + protein coding gene ankyrin repeat and SOCS box-containing 3
Tssr107272 11 30954325 to 30954393 68 - TSS region transcription start site region 107272
Tssr100764 11 30954389 to 30954439 50 + TSS region transcription start site region 100764
Tssr100765 11 30954450 to 30954480 30 + TSS region transcription start site region 100765
Tssr100766 11 30959007 to 30959018 11 + TSS region transcription start site region 100766
Chac2 11 30976707 to 30986350 9643 - protein coding gene ChaC, cation transport regulator 2
Tssr100767 11 30985455 to 30985459 4 + TSS region transcription start site region 100767
Cpgi2687 11 30986103 to 30986348 245 CpG island CpG island 2687
Tssr107273 11 30986246 to 30986257 11 - TSS region transcription start site region 107273
Tssr107274 11 30986264 to 30986296 32 - TSS region transcription start site region 107274
Tssr107275 11 30986297 to 30986325 28 - TSS region transcription start site region 107275
Tssr107276 11 30986326 to 30986372 46 - TSS region transcription start site region 107276