Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:29493795-29943839

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc88a 11 29373658 to 29510808 137150 + protein coding gene coiled coil domain containing 88A
Tssr100713 11 29499541 to 29499545 4 + TSS region transcription start site region 100713
Tssr100714 11 29503977 to 29503989 12 + TSS region transcription start site region 100714
Tssr100715 11 29505560 to 29505571 11 + TSS region transcription start site region 100715
Tssr100716 11 29507692 to 29507703 11 + TSS region transcription start site region 100716
Tssr100717 11 29508479 to 29508521 42 + TSS region transcription start site region 100717
Tssr100718 11 29508600 to 29508613 13 + TSS region transcription start site region 100718
Prorsd1 11 29511757 to 29515033 3276 - protein coding gene prolyl-tRNA synthetase domain containing 1
Cpgi2673 11 29514763 to 29515311 548 CpG island CpG island 2673
Tssr107212 11 29515017 to 29515040 23 - TSS region transcription start site region 107212
Gm12089 11 29515086 to 29517355 2269 + antisense lncRNA gene predicted gene 12089
Cpgi2674 11 29526054 to 29526726 672 CpG island CpG island 2674
Tssr107213 11 29526343 to 29526379 36 - TSS region transcription start site region 107213
Tssr100719 11 29526407 to 29526420 13 + TSS region transcription start site region 100719
Mtif2 11 29526408 to 29545279 18871 + protein coding gene mitochondrial translational initiation factor 2
Tssr100720 11 29526423 to 29526474 51 + TSS region transcription start site region 100720
Rps27a 11 29545842 to 29548040 2198 - protein coding gene ribosomal protein S27A
Cpgi2675 11 29547320 to 29548528 1208 CpG island CpG island 2675
Tssr107214 11 29547361 to 29547364 3 - TSS region transcription start site region 107214
Tssr107215 11 29547803 to 29547812 9 - TSS region transcription start site region 107215
Tssr107216 11 29547820 to 29547870 50 - TSS region transcription start site region 107216
Tssr107217 11 29547871 to 29547878 7 - TSS region transcription start site region 107217
Tssr107218 11 29547906 to 29547917 11 - TSS region transcription start site region 107218
Clhc1 11 29547950 to 29578360 30410 + protein coding gene clathrin heavy chain linker domain containing 1
Tssr100721 11 29548209 to 29548255 46 + TSS region transcription start site region 100721
Tssr100722 11 29548365 to 29548403 38 + TSS region transcription start site region 100722
Tssr107219 11 29548494 to 29548512 18 - TSS region transcription start site region 107219
Gm12090 11 29552082 to 29553010 928 - pseudogene predicted gene 12090
Gm12088 11 29595787 to 29597700 1913 + lincRNA gene predicted gene 12088
Gm12091 11 29601784 to 29602613 829 - pseudogene predicted gene 12091
Gm12092 11 29612324 to 29645509 33185 - lincRNA gene predicted gene 12092
Gm12093 11 29688668 to 29689798 1130 - pseudogene predicted gene 12093
Tssr100723 11 29692312 to 29692328 16 + TSS region transcription start site region 100723
Cpgi2676 11 29692701 to 29694167 1466 CpG island CpG island 2676
Tssr100724 11 29692937 to 29692997 60 + TSS region transcription start site region 100724
Rtn4 11 29692947 to 29744331 51384 + protein coding gene reticulon 4
Tssr100725 11 29693004 to 29693015 11 + TSS region transcription start site region 100725
Tssr100726 11 29693033 to 29693047 14 + TSS region transcription start site region 100726
Tssr100727 11 29693159 to 29693168 9 + TSS region transcription start site region 100727
Tssr100728 11 29704277 to 29704284 7 + TSS region transcription start site region 100728
Tssr100729 11 29706788 to 29706818 30 + TSS region transcription start site region 100729
Tssr100730 11 29706996 to 29707022 26 + TSS region transcription start site region 100730
Tssr100731 11 29707283 to 29707295 12 + TSS region transcription start site region 100731
Tssr100732 11 29707397 to 29707416 19 + TSS region transcription start site region 100732
Tssr100733 11 29707733 to 29707758 25 + TSS region transcription start site region 100733
Tssr100734 11 29710813 to 29710829 16 + TSS region transcription start site region 100734
Tssr100735 11 29712813 to 29712819 6 + TSS region transcription start site region 100735
Tssr100736 11 29715691 to 29715703 12 + TSS region transcription start site region 100736
Tssr100737 11 29718697 to 29718753 56 + TSS region transcription start site region 100737
Tssr100738 11 29718781 to 29718782 1 + TSS region transcription start site region 100738
Tssr100739 11 29718785 to 29718791 6 + TSS region transcription start site region 100739
Tssr100740 11 29718795 to 29718839 44 + TSS region transcription start site region 100740
Tssr100741 11 29719130 to 29719157 27 + TSS region transcription start site region 100741
Tssr100742 11 29731501 to 29731507 6 + TSS region transcription start site region 100742
Tssr100743 11 29741459 to 29741482 23 + TSS region transcription start site region 100743
Tssr100744 11 29742083 to 29742143 60 + TSS region transcription start site region 100744
Tssr100745 11 29742348 to 29742406 58 + TSS region transcription start site region 100745
Tssr107220 11 29742912 to 29742916 4 - TSS region transcription start site region 107220
Eml6 11 29743048 to 30026033 282985 - protein coding gene echinoderm microtubule associated protein like 6
Gm39671 11 29808889 to 29822298 13409 + lncRNA gene predicted gene, 39671
Tssr100746 11 29808903 to 29808925 22 + TSS region transcription start site region 100746
4931440F15Rik 11 29822395 to 29825668 3273 - protein coding gene RIKEN cDNA 4931440F15 gene
Cpgi2677 11 29824614 to 29825790 1176 CpG island CpG island 2677
Tssr107221 11 29825649 to 29825680 31 - TSS region transcription start site region 107221
Gm12094 11 29840375 to 29840846 471 + pseudogene predicted gene 12094
Gm22588 11 29849461 to 29849600 139 + snoRNA gene predicted gene, 22588
Tssr3454 11 29862506 to 29862512 6 + TSS region transcription start site region 3454
Tssr107222 11 29879760 to 29879781 21 - TSS region transcription start site region 107222