Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:28565744-29726828

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc85a 11 28385685 to 28584324 198639 - protein coding gene coiled-coil domain containing 85A
Tssr107204 11 28574671 to 28574675 4 - TSS region transcription start site region 107204
Cpgi2667 11 28583147 to 28584435 1288 CpG island CpG island 2667
Tssr107205 11 28584074 to 28584105 31 - TSS region transcription start site region 107205
Tssr107206 11 28584219 to 28584229 10 - TSS region transcription start site region 107206
Tssr107207 11 28584260 to 28584309 49 - TSS region transcription start site region 107207
Gm34075 11 28628078 to 28637871 9793 - lncRNA gene predicted gene, 34075
2810471M01Rik 11 28681564 to 28693276 11712 + lincRNA gene RIKEN cDNA 2810471M01 gene
Tssr100683 11 28712331 to 28712342 11 + TSS region transcription start site region 100683
Gm12082 11 28729941 to 28751781 21840 + lincRNA gene predicted gene 12082
Tssr100684 11 28730472 to 28730482 10 + TSS region transcription start site region 100684
Mir216b 11 28746191 to 28746276 85 + miRNA gene microRNA 216b
Mir216c 11 28746198 to 28746266 68 - miRNA gene microRNA 216c
Gm40818 11 28754078 to 28772168 18090 + lncRNA gene predicted gene, 40818
Mir216a 11 28757012 to 28757083 71 + miRNA gene microRNA 216a
Tssr100685 11 28763468 to 28763472 4 + TSS region transcription start site region 100685
Mir217 11 28763728 to 28763835 107 + miRNA gene microRNA 217
Gm34185 11 28828959 to 28852908 23949 - lncRNA gene predicted gene, 34185
D11Mit83 11 28842976 to 28843105 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 83
D11Mit172 11 28852602 to 28852751 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 172
Cpgi2668 11 28853058 to 28853654 596 CpG island CpG island 2668
Tssr100686 11 28853189 to 28853259 70 + TSS region transcription start site region 100686
Efemp1 11 28853205 to 28926743 73538 + protein coding gene epidermal growth factor-containing fibulin-like extracellular matrix protein 1
Tssr3451 11 28853758 to 28853773 15 + TSS region transcription start site region 3451
Tssr3452 11 28853792 to 28853798 6 + TSS region transcription start site region 3452
Tssr100687 11 28854300 to 28854322 22 + TSS region transcription start site region 100687
Tssr100688 11 28921464 to 28921496 32 + TSS region transcription start site region 100688
Rpsa-ps5 11 28956725 to 28957609 884 + pseudogene ribosomal protein SA, pseudogene 5
Cpgi2669 11 29130573 to 29131074 501 CpG island CpG island 2669
Tssr100689 11 29130733 to 29130757 24 + TSS region transcription start site region 100689
Pnpt1 11 29130744 to 29161828 31084 + protein coding gene polyribonucleotide nucleotidyltransferase 1
Tssr3453 11 29130779 to 29130788 9 + TSS region transcription start site region 3453
Tssr100690 11 29131652 to 29131678 26 + TSS region transcription start site region 100690
A630052C17Rik 11 29170909 to 29173558 2649 - unclassified non-coding RNA gene RIKEN cDNA A630052C17 gene
Cpgi2670 11 29171945 to 29173671 1726 CpG island CpG island 2670
Tssr107208 11 29172727 to 29172756 29 - TSS region transcription start site region 107208
Ppp4r3b 11 29172890 to 29220797 47907 + protein coding gene protein phosphatase 4 regulatory subunit 3B
Tssr100691 11 29172913 to 29172925 12 + TSS region transcription start site region 100691
Tssr100692 11 29172934 to 29172943 9 + TSS region transcription start site region 100692
Tssr100693 11 29172948 to 29172996 48 + TSS region transcription start site region 100693
Tssr100694 11 29178416 to 29178424 8 + TSS region transcription start site region 100694
Tssr100695 11 29179435 to 29179443 8 + TSS region transcription start site region 100695
Tssr100696 11 29194211 to 29194217 6 + TSS region transcription start site region 100696
Tssr100697 11 29197657 to 29197664 7 + TSS region transcription start site region 100697
Tssr100698 11 29198869 to 29198884 15 + TSS region transcription start site region 100698
Cfap36 11 29221532 to 29247409 25877 - protein coding gene cilia and flagella associated protein 36
Tssr107209 11 29246395 to 29246398 3 - TSS region transcription start site region 107209
Cpgi2671 11 29246924 to 29247621 697 CpG island CpG island 2671
Tssr107210 11 29247208 to 29247329 121 - TSS region transcription start site region 107210
Gm12085 11 29333385 to 29334266 881 - pseudogene predicted gene 12085
Gm23109 11 29334934 to 29335059 125 + snRNA gene predicted gene, 23109
Gm12086 11 29339455 to 29339682 227 - pseudogene predicted gene 12086
Tssr107211 11 29346005 to 29346011 6 - TSS region transcription start site region 107211
Gm12087 11 29354199 to 29354456 257 + pseudogene predicted gene 12087
Cpgi2672 11 29373305 to 29374267 962 CpG island CpG island 2672
Tssr100699 11 29373590 to 29373613 23 + TSS region transcription start site region 100699
Tssr100700 11 29373618 to 29373723 105 + TSS region transcription start site region 100700
Ccdc88a 11 29373658 to 29510808 137150 + protein coding gene coiled coil domain containing 88A
Tssr100701 11 29373726 to 29373737 11 + TSS region transcription start site region 100701
Tssr100702 11 29374290 to 29374325 35 + TSS region transcription start site region 100702
Tssr100703 11 29374363 to 29374366 3 + TSS region transcription start site region 100703
Tssr100704 11 29374378 to 29374385 7 + TSS region transcription start site region 100704
Tssr100705 11 29374576 to 29374581 5 + TSS region transcription start site region 100705
Tssr100706 11 29455429 to 29455451 22 + TSS region transcription start site region 100706
Tssr100707 11 29456533 to 29456550 17 + TSS region transcription start site region 100707
Tssr100708 11 29460943 to 29460986 43 + TSS region transcription start site region 100708
Tssr100709 11 29463676 to 29463691 15 + TSS region transcription start site region 100709
Tssr100710 11 29463712 to 29463733 21 + TSS region transcription start site region 100710
Tssr100711 11 29463735 to 29463749 14 + TSS region transcription start site region 100711
Tssr100712 11 29482284 to 29482314 30 + TSS region transcription start site region 100712
Tssr100713 11 29499541 to 29499545 4 + TSS region transcription start site region 100713
Tssr100714 11 29503977 to 29503989 12 + TSS region transcription start site region 100714
Tssr100715 11 29505560 to 29505571 11 + TSS region transcription start site region 100715
Tssr100716 11 29507692 to 29507703 11 + TSS region transcription start site region 100716
Tssr100717 11 29508479 to 29508521 42 + TSS region transcription start site region 100717
Tssr100718 11 29508600 to 29508613 13 + TSS region transcription start site region 100718
Prorsd1 11 29511757 to 29515033 3276 - protein coding gene prolyl-tRNA synthetase domain containing 1
Cpgi2673 11 29514763 to 29515311 548 CpG island CpG island 2673
Tssr107212 11 29515017 to 29515040 23 - TSS region transcription start site region 107212
Gm12089 11 29515086 to 29517355 2269 + antisense lncRNA gene predicted gene 12089
Cpgi2674 11 29526054 to 29526726 672 CpG island CpG island 2674
Tssr107213 11 29526343 to 29526379 36 - TSS region transcription start site region 107213
Tssr100719 11 29526407 to 29526420 13 + TSS region transcription start site region 100719
Mtif2 11 29526408 to 29545279 18871 + protein coding gene mitochondrial translational initiation factor 2
Tssr100720 11 29526423 to 29526474 51 + TSS region transcription start site region 100720
Rps27a 11 29545842 to 29548040 2198 - protein coding gene ribosomal protein S27A
Cpgi2675 11 29547320 to 29548528 1208 CpG island CpG island 2675
Tssr107214 11 29547361 to 29547364 3 - TSS region transcription start site region 107214
Tssr107215 11 29547803 to 29547812 9 - TSS region transcription start site region 107215
Tssr107216 11 29547820 to 29547870 50 - TSS region transcription start site region 107216
Tssr107217 11 29547871 to 29547878 7 - TSS region transcription start site region 107217
Tssr107218 11 29547906 to 29547917 11 - TSS region transcription start site region 107218
Clhc1 11 29547950 to 29578360 30410 + protein coding gene clathrin heavy chain linker domain containing 1
Tssr100721 11 29548209 to 29548255 46 + TSS region transcription start site region 100721
Tssr100722 11 29548365 to 29548403 38 + TSS region transcription start site region 100722
Tssr107219 11 29548494 to 29548512 18 - TSS region transcription start site region 107219
Gm12090 11 29552082 to 29553010 928 - pseudogene predicted gene 12090
Gm12088 11 29595787 to 29597700 1913 + lincRNA gene predicted gene 12088
Gm12091 11 29601784 to 29602613 829 - pseudogene predicted gene 12091
Gm12092 11 29612324 to 29645509 33185 - lincRNA gene predicted gene 12092
Gm12093 11 29688668 to 29689798 1130 - pseudogene predicted gene 12093
Tssr100723 11 29692312 to 29692328 16 + TSS region transcription start site region 100723
Cpgi2676 11 29692701 to 29694167 1466 CpG island CpG island 2676
Tssr100724 11 29692937 to 29692997 60 + TSS region transcription start site region 100724
Rtn4 11 29692947 to 29744331 51384 + protein coding gene reticulon 4
Tssr100725 11 29693004 to 29693015 11 + TSS region transcription start site region 100725
Tssr100726 11 29693033 to 29693047 14 + TSS region transcription start site region 100726
Tssr100727 11 29693159 to 29693168 9 + TSS region transcription start site region 100727
Tssr100728 11 29704277 to 29704284 7 + TSS region transcription start site region 100728
Tssr100729 11 29706788 to 29706818 30 + TSS region transcription start site region 100729
Tssr100730 11 29706996 to 29707022 26 + TSS region transcription start site region 100730
Tssr100731 11 29707283 to 29707295 12 + TSS region transcription start site region 100731
Tssr100732 11 29707397 to 29707416 19 + TSS region transcription start site region 100732
Tssr100733 11 29707733 to 29707758 25 + TSS region transcription start site region 100733
Tssr100734 11 29710813 to 29710829 16 + TSS region transcription start site region 100734
Tssr100735 11 29712813 to 29712819 6 + TSS region transcription start site region 100735
Tssr100736 11 29715691 to 29715703 12 + TSS region transcription start site region 100736
Tssr100737 11 29718697 to 29718753 56 + TSS region transcription start site region 100737
Tssr100738 11 29718781 to 29718782 1 + TSS region transcription start site region 100738
Tssr100739 11 29718785 to 29718791 6 + TSS region transcription start site region 100739
Tssr100740 11 29718795 to 29718839 44 + TSS region transcription start site region 100740
Tssr100741 11 29719130 to 29719157 27 + TSS region transcription start site region 100741