Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:2845664-3365681

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr99990 11 3100424 to 3100465 41 + TSS region transcription start site region 99990
Tssr99991 11 3101245 to 3101286 41 + TSS region transcription start site region 99991
Tssr106439 11 3101280 to 3101289 9 - TSS region transcription start site region 106439
Tssr99992 11 3101412 to 3101433 21 + TSS region transcription start site region 99992
Tssr99993 11 3101486 to 3101499 13 + TSS region transcription start site region 99993
Tssr99994 11 3101724 to 3101736 12 + TSS region transcription start site region 99994
Cpgi2429 11 3101728 to 3102083 355 CpG island CpG island 2429
Tssr99995 11 3101951 to 3101961 10 + TSS region transcription start site region 99995
Tssr99996 11 3102273 to 3102276 3 + TSS region transcription start site region 99996
Tssr99997 11 3103532 to 3103550 18 + TSS region transcription start site region 99997
Tssr99998 11 3104244 to 3104287 43 + TSS region transcription start site region 99998
Tssr99999 11 3104716 to 3104727 11 + TSS region transcription start site region 99999
Tssr106440 11 3104756 to 3104767 11 - TSS region transcription start site region 106440
Tssr106441 11 3104783 to 3104799 16 - TSS region transcription start site region 106441
Tssr100000 11 3105050 to 3105062 12 + TSS region transcription start site region 100000
Tssr100001 11 3105170 to 3105179 9 + TSS region transcription start site region 100001
Cpgi2430 11 3105401 to 3105602 201 CpG island CpG island 2430
Tssr100002 11 3105538 to 3105542 4 + TSS region transcription start site region 100002
Tssr100003 11 3105664 to 3105681 17 + TSS region transcription start site region 100003
Cpgi2431 11 3123264 to 3124136 872 CpG island CpG island 2431
Tssr106442 11 3123905 to 3123920 15 - TSS region transcription start site region 106442
Tssr100004 11 3123999 to 3124031 32 + TSS region transcription start site region 100004
Tssr100005 11 3124043 to 3124054 11 + TSS region transcription start site region 100005
Pisd-ps1 11 3125904 to 3131004 5100 + pseudogene phosphatidylserine decarboxylase, pseudogene 1
Cpgi2432 11 3127139 to 3127599 460 CpG island CpG island 2432
Cpgi2433 11 3128865 to 3129174 309 CpG island CpG island 2433
Cpgi2434 11 3129531 to 3130076 545 CpG island CpG island 2434
Cpgi2435 11 3130745 to 3131132 387 CpG island CpG island 2435
Tssr100006 11 3131098 to 3131110 12 + TSS region transcription start site region 100006
Sfi1 11 3131850 to 3193463 61613 - protein coding gene Sfi1 homolog, spindle assembly associated (yeast)
Cpgi2436 11 3131947 to 3137915 5968 CpG island CpG island 2436
Gm33862 11 3137121 to 3139791 2670 + lncRNA gene predicted gene, 33862
Cpgi2438 11 3139221 to 3140243 1022 CpG island CpG island 2438
Gm11399 11 3142048 to 3143363 1315 + antisense lncRNA gene predicted gene 11399
Cpgi2440 11 3142049 to 3146471 4422 CpG island CpG island 2440
Tssr106443 11 3146351 to 3146392 41 - TSS region transcription start site region 106443
Tssr100007 11 3147562 to 3147573 11 + TSS region transcription start site region 100007
Tssr100008 11 3148817 to 3148819 2 + TSS region transcription start site region 100008
Tssr106444 11 3148908 to 3148916 8 - TSS region transcription start site region 106444
Cpgi2444 11 3149592 to 3151583 1991 CpG island CpG island 2444
Gm11400 11 3149742 to 3150955 1213 - pseudogene predicted gene 11400
Tssr106445 11 3150339 to 3150369 30 - TSS region transcription start site region 106445
Tssr106446 11 3151426 to 3151459 33 - TSS region transcription start site region 106446
Cpgi2445 11 3152102 to 3153870 1768 CpG island CpG island 2445
Tssr106447 11 3156341 to 3156344 3 - TSS region transcription start site region 106447
Cpgi2448 11 3156421 to 3158980 2559 CpG island CpG island 2448
Tssr100009 11 3163911 to 3163929 18 + TSS region transcription start site region 100009
Tssr100010 11 3163954 to 3164001 47 + TSS region transcription start site region 100010
Cpgi2452 11 3165381 to 3165986 605 CpG island CpG island 2452
Cpgi2457 11 3172306 to 3172581 275 CpG island CpG island 2457
Tssr106448 11 3172795 to 3172797 2 - TSS region transcription start site region 106448
Cpgi2458 11 3173264 to 3173806 542 CpG island CpG island 2458
Tssr106449 11 3173319 to 3173329 10 - TSS region transcription start site region 106449
Cpgi2461 11 3176616 to 3178184 1568 CpG island CpG island 2461
Cpgi2464 11 3183767 to 3184055 288 CpG island CpG island 2464
Cpgi2468 11 3188729 to 3189425 696 CpG island CpG island 2468
Cpgi2469 11 3192018 to 3194670 2652 CpG island CpG island 2469
9530037G02Rik 11 3193080 to 3194309 1229 unclassified gene RIKEN cDNA 9530037G02 gene
Tssr106450 11 3193127 to 3193173 46 - TSS region transcription start site region 106450
Tssr106451 11 3193388 to 3193450 62 - TSS region transcription start site region 106451
Tssr100011 11 3193490 to 3193510 20 + TSS region transcription start site region 100011
Gm12735 11 3193516 to 3194263 747 - antisense lncRNA gene predicted gene 12735
Tssr100012 11 3193562 to 3193578 16 + TSS region transcription start site region 100012
Fau-ps2 11 3196390 to 3196727 337 - pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2
Tssr106452 11 3198517 to 3198561 44 - TSS region transcription start site region 106452
Tssr100013 11 3198582 to 3198608 26 + TSS region transcription start site region 100013
Cpgi2474 11 3202112 to 3203348 1236 CpG island CpG island 2474
Eif4enif1 11 3202392 to 3244588 42196 + protein coding gene eukaryotic translation initiation factor 4E nuclear import factor 1
Tssr100014 11 3202612 to 3202654 42 + TSS region transcription start site region 100014
Tssr100015 11 3202684 to 3202729 45 + TSS region transcription start site region 100015
Tssr100016 11 3202876 to 3202904 28 + TSS region transcription start site region 100016
Tssr100017 11 3202908 to 3202933 25 + TSS region transcription start site region 100017
Tssr106453 11 3203333 to 3203360 27 - TSS region transcription start site region 106453
Tssr100018 11 3223379 to 3223382 3 + TSS region transcription start site region 100018
Tssr100019 11 3233984 to 3233988 4 + TSS region transcription start site region 100019
Drg1 11 3249919 to 3266652 16733 - protein coding gene developmentally regulated GTP binding protein 1
Cpgi2475 11 3265825 to 3266952 1127 CpG island CpG island 2475
Tssr106454 11 3266322 to 3266333 11 - TSS region transcription start site region 106454
Tssr106455 11 3266342 to 3266353 11 - TSS region transcription start site region 106455
Tssr106456 11 3266377 to 3266423 46 - TSS region transcription start site region 106456
Tssr100020 11 3266506 to 3266534 28 + TSS region transcription start site region 100020
Cpgi2476 11 3288482 to 3291899 3417 CpG island CpG island 2476
Patz1 11 3289131 to 3309083 19952 + protein coding gene POZ (BTB) and AT hook containing zinc finger 1
Tssr100021 11 3289168 to 3289194 26 + TSS region transcription start site region 100021
Tssr100022 11 3289680 to 3289741 61 + TSS region transcription start site region 100022
Tssr100023 11 3289880 to 3289922 42 + TSS region transcription start site region 100023
Tssr100024 11 3290300 to 3290348 48 + TSS region transcription start site region 100024
Tssr100025 11 3290463 to 3290485 22 + TSS region transcription start site region 100025
Tssr100026 11 3290808 to 3290839 31 + TSS region transcription start site region 100026
Tssr100027 11 3291327 to 3291371 44 + TSS region transcription start site region 100027
Tssr106457 11 3291609 to 3291630 21 - TSS region transcription start site region 106457
Tssr106458 11 3291642 to 3291662 20 - TSS region transcription start site region 106458
Tssr100028 11 3291738 to 3291766 28 + TSS region transcription start site region 100028
Tssr100029 11 3291829 to 3291848 19 + TSS region transcription start site region 100029
Tssr100030 11 3292286 to 3292340 54 + TSS region transcription start site region 100030
Tssr100031 11 3292443 to 3292452 9 + TSS region transcription start site region 100031
Tssr100032 11 3292938 to 3292962 24 + TSS region transcription start site region 100032
Tssr100033 11 3293109 to 3293128 19 + TSS region transcription start site region 100033
Tssr100034 11 3293138 to 3293160 22 + TSS region transcription start site region 100034
Tssr100035 11 3293228 to 3293245 17 + TSS region transcription start site region 100035
Tssr100036 11 3293276 to 3293288 12 + TSS region transcription start site region 100036
9630045H20Rik 11 3300667 to 3304464 3797 unclassified gene RIKEN cDNA 9630045H20 gene
Gm12592 11 3305426 to 3331178 25752 - unclassified non-coding RNA gene predicted gene 12592
Gm11944 11 3309000 to 3320722 11722 + lncRNA gene predicted gene 11944
Tssr100037 11 3310056 to 3310061 5 + TSS region transcription start site region 100037
Tssr100038 11 3311032 to 3311059 27 + TSS region transcription start site region 100038
D11Dcr1 11 3315493 to 3315591 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 1
Pik3ip1 11 3330401 to 3342971 12570 + protein coding gene phosphoinositide-3-kinase interacting protein 1
Tssr100039 11 3330521 to 3330541 20 + TSS region transcription start site region 100039
Tssr100040 11 3330668 to 3330694 26 + TSS region transcription start site region 100040
Tssr100041 11 3330740 to 3330749 9 + TSS region transcription start site region 100041
Tssr3405 11 3330754 to 3330759 5 + TSS region transcription start site region 3405
Tssr100042 11 3330777 to 3330780 3 + TSS region transcription start site region 100042
Tssr100043 11 3330781 to 3330812 31 + TSS region transcription start site region 100043
Tssr100044 11 3330816 to 3330830 14 + TSS region transcription start site region 100044
Tssr100045 11 3330832 to 3330843 11 + TSS region transcription start site region 100045
Tssr100046 11 3330879 to 3330912 33 + TSS region transcription start site region 100046
Tssr100047 11 3330916 to 3330934 18 + TSS region transcription start site region 100047
Tssr100048 11 3330946 to 3330961 15 + TSS region transcription start site region 100048
Tssr106459 11 3331180 to 3331201 21 - TSS region transcription start site region 106459
Cpgi2477 11 3331772 to 3332720 948 CpG island CpG island 2477
Tssr106460 11 3332253 to 3332276 23 - TSS region transcription start site region 106460
Tssr106461 11 3332277 to 3332301 24 - TSS region transcription start site region 106461
Tssr100049 11 3332426 to 3332460 34 + TSS region transcription start site region 100049
Tssr100050 11 3332461 to 3332484 23 + TSS region transcription start site region 100050
Tssr3406 11 3332485 to 3332488 3 + TSS region transcription start site region 3406
Tssr100051 11 3332494 to 3332511 17 + TSS region transcription start site region 100051
Tssr106462 11 3334248 to 3334259 11 - TSS region transcription start site region 106462
Tssr106463 11 3335812 to 3335836 24 - TSS region transcription start site region 106463
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr106464 11 3348681 to 3348696 15 - TSS region transcription start site region 106464
Tssr3407 11 3353380 to 3353383 3 - TSS region transcription start site region 3407
Gm11948 11 3353573 to 3354911 1338 - sense intronic lncRNA gene predicted gene 11948
Tssr106465 11 3355363 to 3355384 21 - TSS region transcription start site region 106465