Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:27713147-29454435

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mndl2 11 25956097 to 27723304 1767207 QTL mandible length 2
D11Mit163 11 27723171 to 27723304 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 163
Gm12079 11 27883112 to 27883355 243 + pseudogene predicted gene 12079
Tssr100682 11 27927040 to 27927043 3 + TSS region transcription start site region 100682
Mchq19 11 28001232 to 28001464 232 QTL mean corpuscular hemoglobin QTL 19
D11Mit230 11 28001232 to 28001464 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 230
Mcvq15 11 28001232 to 28001464 232 QTL mean corpuscular volume QTL 15
D11Mit185 11 28001274 to 28001464 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 185
Gm12080 11 28047876 to 28048959 1083 + pseudogene predicted gene 12080
Gm6685 11 28339106 to 28339867 761 - pseudogene predicted pseudogene 6685
Gm12081 11 28360362 to 28364339 3977 + antisense lncRNA gene predicted gene 12081
Cpgi2666 11 28365465 to 28365689 224 CpG island CpG island 2666
Tssr107203 11 28365564 to 28365575 11 - TSS region transcription start site region 107203
Ccdc85a 11 28385685 to 28584324 198639 - protein coding gene coiled-coil domain containing 85A
Tssr107204 11 28574671 to 28574675 4 - TSS region transcription start site region 107204
Cpgi2667 11 28583147 to 28584435 1288 CpG island CpG island 2667
Tssr107205 11 28584074 to 28584105 31 - TSS region transcription start site region 107205
Tssr107206 11 28584219 to 28584229 10 - TSS region transcription start site region 107206
Tssr107207 11 28584260 to 28584309 49 - TSS region transcription start site region 107207
Gm34075 11 28628078 to 28637871 9793 - lncRNA gene predicted gene, 34075
2810471M01Rik 11 28681564 to 28693276 11712 + lincRNA gene RIKEN cDNA 2810471M01 gene
Tssr100683 11 28712331 to 28712342 11 + TSS region transcription start site region 100683
Gm12082 11 28729941 to 28751781 21840 + lincRNA gene predicted gene 12082
Tssr100684 11 28730472 to 28730482 10 + TSS region transcription start site region 100684
Mir216b 11 28746191 to 28746276 85 + miRNA gene microRNA 216b
Mir216c 11 28746198 to 28746266 68 - miRNA gene microRNA 216c
Gm40818 11 28754078 to 28772168 18090 + lncRNA gene predicted gene, 40818
Mir216a 11 28757012 to 28757083 71 + miRNA gene microRNA 216a
Tssr100685 11 28763468 to 28763472 4 + TSS region transcription start site region 100685
Mir217 11 28763728 to 28763835 107 + miRNA gene microRNA 217
Gm34185 11 28828959 to 28852908 23949 - lncRNA gene predicted gene, 34185
D11Mit83 11 28842976 to 28843105 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 83
D11Mit172 11 28852602 to 28852751 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 172
Cpgi2668 11 28853058 to 28853654 596 CpG island CpG island 2668
Tssr100686 11 28853189 to 28853259 70 + TSS region transcription start site region 100686
Efemp1 11 28853205 to 28926743 73538 + protein coding gene epidermal growth factor-containing fibulin-like extracellular matrix protein 1
Tssr3451 11 28853758 to 28853773 15 + TSS region transcription start site region 3451
Tssr3452 11 28853792 to 28853798 6 + TSS region transcription start site region 3452
Tssr100687 11 28854300 to 28854322 22 + TSS region transcription start site region 100687
Tssr100688 11 28921464 to 28921496 32 + TSS region transcription start site region 100688
Rpsa-ps5 11 28956725 to 28957609 884 + pseudogene ribosomal protein SA, pseudogene 5
Cpgi2669 11 29130573 to 29131074 501 CpG island CpG island 2669
Tssr100689 11 29130733 to 29130757 24 + TSS region transcription start site region 100689
Pnpt1 11 29130744 to 29161828 31084 + protein coding gene polyribonucleotide nucleotidyltransferase 1
Tssr3453 11 29130779 to 29130788 9 + TSS region transcription start site region 3453
Tssr100690 11 29131652 to 29131678 26 + TSS region transcription start site region 100690
A630052C17Rik 11 29170909 to 29173558 2649 - unclassified non-coding RNA gene RIKEN cDNA A630052C17 gene
Cpgi2670 11 29171945 to 29173671 1726 CpG island CpG island 2670
Tssr107208 11 29172727 to 29172756 29 - TSS region transcription start site region 107208
Ppp4r3b 11 29172890 to 29220797 47907 + protein coding gene protein phosphatase 4 regulatory subunit 3B
Tssr100691 11 29172913 to 29172925 12 + TSS region transcription start site region 100691
Tssr100692 11 29172934 to 29172943 9 + TSS region transcription start site region 100692
Tssr100693 11 29172948 to 29172996 48 + TSS region transcription start site region 100693
Tssr100694 11 29178416 to 29178424 8 + TSS region transcription start site region 100694
Tssr100695 11 29179435 to 29179443 8 + TSS region transcription start site region 100695
Tssr100696 11 29194211 to 29194217 6 + TSS region transcription start site region 100696
Tssr100697 11 29197657 to 29197664 7 + TSS region transcription start site region 100697
Tssr100698 11 29198869 to 29198884 15 + TSS region transcription start site region 100698
Cfap36 11 29221532 to 29247409 25877 - protein coding gene cilia and flagella associated protein 36
Tssr107209 11 29246395 to 29246398 3 - TSS region transcription start site region 107209
Cpgi2671 11 29246924 to 29247621 697 CpG island CpG island 2671
Tssr107210 11 29247208 to 29247329 121 - TSS region transcription start site region 107210
Gm12085 11 29333385 to 29334266 881 - pseudogene predicted gene 12085
Gm23109 11 29334934 to 29335059 125 + snRNA gene predicted gene, 23109
Gm12086 11 29339455 to 29339682 227 - pseudogene predicted gene 12086
Tssr107211 11 29346005 to 29346011 6 - TSS region transcription start site region 107211
Gm12087 11 29354199 to 29354456 257 + pseudogene predicted gene 12087
Cpgi2672 11 29373305 to 29374267 962 CpG island CpG island 2672
Tssr100699 11 29373590 to 29373613 23 + TSS region transcription start site region 100699
Tssr100700 11 29373618 to 29373723 105 + TSS region transcription start site region 100700
Ccdc88a 11 29373658 to 29510808 137150 + protein coding gene coiled coil domain containing 88A
Tssr100701 11 29373726 to 29373737 11 + TSS region transcription start site region 100701
Tssr100702 11 29374290 to 29374325 35 + TSS region transcription start site region 100702
Tssr100703 11 29374363 to 29374366 3 + TSS region transcription start site region 100703
Tssr100704 11 29374378 to 29374385 7 + TSS region transcription start site region 100704
Tssr100705 11 29374576 to 29374581 5 + TSS region transcription start site region 100705