Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:25279207-27540501

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12069 11 25301263 to 25322786 21523 + lincRNA gene predicted gene 12069
4933427E13Rik 11 25326107 to 25367137 41030 + lincRNA gene RIKEN cDNA 4933427E13 gene
D11Hjk23 11 25397651 to 25398033 382 DNA segment DNA segment, Chr 11, H. Jockusch 23
D11Mit19 11 25422121 to 25422260 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 19
Bits3 11 25422121 to 25422260 139 QTL bitterness sensitivity 3
D11Hjk24 11 25459030 to 25459358 328 DNA segment DNA segment, Chr 11, H. Jockusch 24
5730522E02Rik 11 25616846 to 26210576 593730 - protein coding gene RIKEN cDNA 5730522E02 gene
Gm23514 11 25685140 to 25685269 129 + snoRNA gene predicted gene, 23514
D11Mit169 11 25885875 to 25886014 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 169
D11Mit229 11 25956097 to 25956218 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 229
Mndl2 11 25956097 to 27723304 1767207 QTL mandible length 2
Pgia28 11 25956097 to 25956218 121 QTL proteoglycan induced arthritis 28
D11Ertd540e 11 25989169 to 25989382 213 DNA segment DNA segment, Chr 11, ERATO Doi 540, expressed
D11Mit82 11 26061780 to 26061942 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 82
Bbaa7 11 26061780 to 44373868 18312088 QTL B.burgdorferi-associated arthritis 7
Nilac1 11 26061780 to 26061942 162 QTL nicotine induced locomotor activity 1
Tssr107186 11 26103809 to 26103846 37 - TSS region transcription start site region 107186
Tssr100676 11 26167713 to 26167716 3 + TSS region transcription start site region 100676
Mir6372 11 26202240 to 26202348 108 + miRNA gene microRNA 6372
Cpgi2663 11 26209907 to 26210950 1043 CpG island CpG island 2663
Tssr107187 11 26210553 to 26210585 32 - TSS region transcription start site region 107187
Gm31023 11 26268013 to 26268357 344 - pseudogene predicted gene, 31023
Gm22868 11 26337540 to 26337703 163 - snRNA gene predicted gene, 22868
Gm18324 11 26384289 to 26384789 500 + pseudogene predicted gene, 18324
6820445E23Rik 11 26386134 to 26387418 1284 unclassified gene RIKEN cDNA 6820445E23 gene
Cpgi2664 11 26387026 to 26387685 659 CpG island CpG island 2664
Fancl 11 26387084 to 26471883 84799 + protein coding gene Fanconi anemia, complementation group L
Tssr100677 11 26387194 to 26387211 17 + TSS region transcription start site region 100677
Tssr107188 11 26387405 to 26387442 37 - TSS region transcription start site region 107188
Gm12713 11 26409207 to 26410501 1294 + pseudogene predicted gene 12713
Tssr100678 11 26412096 to 26412098 2 + TSS region transcription start site region 100678
Vrk2 11 26471398 to 26594014 122616 - protein coding gene vaccinia related kinase 2
Tssr107189 11 26570147 to 26570151 4 - TSS region transcription start site region 107189
Tssr107190 11 26578477 to 26578496 19 - TSS region transcription start site region 107190
Tssr107191 11 26584752 to 26584799 47 - TSS region transcription start site region 107191
Cpgi2665 11 26593135 to 26593876 741 CpG island CpG island 2665
Gm6899 11 26593241 to 26593862 621 + protein coding gene predicted gene 6899
Tssr107192 11 26593607 to 26593663 56 - TSS region transcription start site region 107192
Tssr107193 11 26593672 to 26593685 13 - TSS region transcription start site region 107193
Tssr107194 11 26593708 to 26593748 40 - TSS region transcription start site region 107194
Tssr3450 11 26593754 to 26593761 7 - TSS region transcription start site region 3450
Tssr107195 11 26593889 to 26593900 11 - TSS region transcription start site region 107195
Tssr107196 11 26593915 to 26593943 28 - TSS region transcription start site region 107196
Tssr107197 11 26593945 to 26593965 20 - TSS region transcription start site region 107197
Tssr107198 11 26593970 to 26594007 37 - TSS region transcription start site region 107198
Tssr107199 11 26594639 to 26594653 14 - TSS region transcription start site region 107199
Tssr107200 11 26594654 to 26594717 63 - TSS region transcription start site region 107200
Gm12071 11 26712905 to 26713373 468 + pseudogene predicted gene 12071
Gm12070 11 26786633 to 26787634 1001 + pseudogene predicted gene 12070
Tssr100679 11 26816299 to 26816304 5 + TSS region transcription start site region 100679
Gm12072 11 26832804 to 26845457 12653 + pseudogene predicted gene 12072
Gm12073 11 26856387 to 26856910 523 - pseudogene predicted gene 12073
D11Mit344 11 26999283 to 26999384 101 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 344
Gm12074 11 27051697 to 27051915 218 + pseudogene predicted gene 12074
n-R5s68 11 27085126 to 27085207 81 + rRNA gene nuclear encoded rRNA 5S 68
Gm24850 11 27087017 to 27087135 118 - snoRNA gene predicted gene, 24850
Pwbwq14 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 14
Ogrq5 11 27248057 to 50745267 23497210 QTL overall growth rate QTL 5
Pwbwq16 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 16
Pwgrq20 11 27248057 to 50745267 23497210 QTL post-weaning growth rate QTL 20
Pwbwq15 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 15
Gm25387 11 27318847 to 27318978 131 - snoRNA gene predicted gene, 25387
Tssr100680 11 27322304 to 27322310 6 + TSS region transcription start site region 100680
Gm12075 11 27417990 to 27418386 396 - pseudogene predicted gene 12075
Gm12077 11 27498867 to 27499587 720 + pseudogene predicted gene 12077
Tssr107201 11 27507124 to 27507128 4 - TSS region transcription start site region 107201
Gm3810 11 27507625 to 27508100 475 - pseudogene predicted gene 3810
Tssr107202 11 27507955 to 27507970 15 - TSS region transcription start site region 107202