Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:24121263-26502786

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcl11a 11 24078056 to 24174123 96067 + protein coding gene B cell CLL/lymphoma 11A (zinc finger protein)
Tssr100671 11 24129066 to 24129072 6 + TSS region transcription start site region 100671
Tssr100672 11 24158300 to 24158311 11 + TSS region transcription start site region 100672
4930538E20Rik 11 24160528 to 24172824 12296 - antisense lncRNA gene RIKEN cDNA 4930538E20 gene
Cpgi2660 11 24163644 to 24164981 1337 CpG island CpG island 2660
Cpgi2661 11 24172719 to 24172929 210 CpG island CpG island 2661
Tssr107182 11 24172766 to 24172773 7 - TSS region transcription start site region 107182
Tssr107183 11 24172775 to 24172786 11 - TSS region transcription start site region 107183
Gm12065 11 24198737 to 24202624 3887 - lincRNA gene predicted gene 12065
Gm12066 11 24201418 to 24217601 16183 + lincRNA gene predicted gene 12066
Gm33440 11 24222209 to 24258739 36530 + lncRNA gene predicted gene, 33440
D11Mit152 11 24226273 to 24226405 132 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 152
Gm33379 11 24231310 to 24234419 3109 + lncRNA gene predicted gene, 33379
Tssr100673 11 24255699 to 24255715 16 + TSS region transcription start site region 100673
Tssr100674 11 24319966 to 24319970 4 + TSS region transcription start site region 100674
Tssr107184 11 24386032 to 24386033 1 - TSS region transcription start site region 107184
Gm12068 11 24426246 to 24722646 296400 + lincRNA gene predicted gene 12068
D11Hjk14 11 24434119 to 24434480 361 DNA segment DNA segment, Chr 11, H. Jockusch 14
4933430M04Rik 11 24481909 to 24569951 88042 + lincRNA gene RIKEN cDNA 4933430M04 gene
Gm12067 11 24552438 to 24553962 1524 - pseudogene predicted gene 12067
Gm22787 11 24553986 to 24554058 72 - snRNA gene predicted gene, 22787
Tssr3449 11 24638068 to 24638072 4 + TSS region transcription start site region 3449
Gm25507 11 24679568 to 24679711 143 - miRNA gene predicted gene, 25507
Gm10466 11 24721006 to 24730722 9716 - lincRNA gene predicted gene 10466
Cpgi2662 11 24824101 to 24824293 192 CpG island CpG island 2662
Tssr100675 11 24855426 to 24855430 4 + TSS region transcription start site region 100675
Gm12665 11 24913237 to 24926385 13148 - lincRNA gene predicted gene 12665
Tssr107185 11 24926045 to 24926061 16 - TSS region transcription start site region 107185
Tnbs2 11 24948052 to 35235853 10287801 QTL tri-nitrobenzene sulfonic acid susceptible 2
D11Mit151 11 24948052 to 24948191 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 151
Gm39613 11 24951560 to 24954764 3204 + lncRNA gene predicted gene, 39613
D11Hjk25 11 25083717 to 25083915 198 DNA segment DNA segment, Chr 11, H. Jockusch 25
D11Mit81 11 25178679 to 25178865 186 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 81
Gm24255 11 25238588 to 25238715 127 - snoRNA gene predicted gene, 24255
Gm12069 11 25301263 to 25322786 21523 + lincRNA gene predicted gene 12069
4933427E13Rik 11 25326107 to 25367137 41030 + lincRNA gene RIKEN cDNA 4933427E13 gene
D11Hjk23 11 25397651 to 25398033 382 DNA segment DNA segment, Chr 11, H. Jockusch 23
Bits3 11 25422121 to 25422260 139 QTL bitterness sensitivity 3
D11Mit19 11 25422121 to 25422260 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 19
D11Hjk24 11 25459030 to 25459358 328 DNA segment DNA segment, Chr 11, H. Jockusch 24
5730522E02Rik 11 25616846 to 26210576 593730 - protein coding gene RIKEN cDNA 5730522E02 gene
Gm23514 11 25685140 to 25685269 129 + snoRNA gene predicted gene, 23514
D11Mit169 11 25885875 to 25886014 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 169
D11Mit229 11 25956097 to 25956218 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 229
Mndl2 11 25956097 to 27723304 1767207 QTL mandible length 2
Pgia28 11 25956097 to 25956218 121 QTL proteoglycan induced arthritis 28
D11Ertd540e 11 25989169 to 25989382 213 DNA segment DNA segment, Chr 11, ERATO Doi 540, expressed
Bbaa7 11 26061780 to 44373868 18312088 QTL B.burgdorferi-associated arthritis 7
D11Mit82 11 26061780 to 26061942 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 82
Nilac1 11 26061780 to 26061942 162 QTL nicotine induced locomotor activity 1
Tssr107186 11 26103809 to 26103846 37 - TSS region transcription start site region 107186
Tssr100676 11 26167713 to 26167716 3 + TSS region transcription start site region 100676
Mir6372 11 26202240 to 26202348 108 + miRNA gene microRNA 6372
Cpgi2663 11 26209907 to 26210950 1043 CpG island CpG island 2663
Tssr107187 11 26210553 to 26210585 32 - TSS region transcription start site region 107187
Gm31023 11 26268013 to 26268357 344 - pseudogene predicted gene, 31023
Gm22868 11 26337540 to 26337703 163 - snRNA gene predicted gene, 22868
Gm18324 11 26384289 to 26384789 500 + pseudogene predicted gene, 18324
6820445E23Rik 11 26386134 to 26387418 1284 unclassified gene RIKEN cDNA 6820445E23 gene
Cpgi2664 11 26387026 to 26387685 659 CpG island CpG island 2664
Fancl 11 26387084 to 26471883 84799 + protein coding gene Fanconi anemia, complementation group L
Tssr100677 11 26387194 to 26387211 17 + TSS region transcription start site region 100677
Tssr107188 11 26387405 to 26387442 37 - TSS region transcription start site region 107188
Gm12713 11 26409207 to 26410501 1294 + pseudogene predicted gene 12713
Tssr100678 11 26412096 to 26412098 2 + TSS region transcription start site region 100678
Vrk2 11 26471398 to 26594014 122616 - protein coding gene vaccinia related kinase 2