Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23728986-25379058

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107144 11 23739461 to 23739473 12 - TSS region transcription start site region 107144
Tssr107145 11 23739752 to 23739764 12 - TSS region transcription start site region 107145
Tssr107146 11 23739821 to 23739838 17 - TSS region transcription start site region 107146
Tssr107147 11 23739869 to 23739877 8 - TSS region transcription start site region 107147
Tssr107148 11 23739930 to 23739952 22 - TSS region transcription start site region 107148
Tssr107149 11 23739955 to 23739985 30 - TSS region transcription start site region 107149
Tssr107150 11 23740021 to 23740030 9 - TSS region transcription start site region 107150
Tssr107151 11 23740181 to 23740184 3 - TSS region transcription start site region 107151
Tssr107152 11 23740832 to 23740842 10 - TSS region transcription start site region 107152
Tssr107153 11 23740911 to 23740922 11 - TSS region transcription start site region 107153
Tssr107154 11 23740953 to 23740984 31 - TSS region transcription start site region 107154
Tssr107155 11 23741118 to 23741130 12 - TSS region transcription start site region 107155
Tssr107156 11 23741382 to 23741398 16 - TSS region transcription start site region 107156
Rel 11 23741729 to 23770970 29241 - protein coding gene reticuloendotheliosis oncogene
Tssr107157 11 23741881 to 23741889 8 - TSS region transcription start site region 107157
Tssr107158 11 23745581 to 23745590 9 - TSS region transcription start site region 107158
Tssr107159 11 23746730 to 23746750 20 - TSS region transcription start site region 107159
Tssr107160 11 23746796 to 23746807 11 - TSS region transcription start site region 107160
Tssr107161 11 23748455 to 23748462 7 - TSS region transcription start site region 107161
Tssr100639 11 23754530 to 23754553 23 + TSS region transcription start site region 100639
Tssr107162 11 23758396 to 23758399 3 - TSS region transcription start site region 107162
Tssr107163 11 23762091 to 23762095 4 - TSS region transcription start site region 107163
Tssr100640 11 23769793 to 23769804 11 + TSS region transcription start site region 100640
Tssr100641 11 23769810 to 23769821 11 + TSS region transcription start site region 100641
Tssr100642 11 23770272 to 23770293 21 + TSS region transcription start site region 100642
Cpgi2652 11 23770488 to 23771728 1240 CpG island CpG island 2652
Tssr107164 11 23770736 to 23770748 12 - TSS region transcription start site region 107164
Tssr107165 11 23770750 to 23770789 39 - TSS region transcription start site region 107165
Tssr107166 11 23770799 to 23770808 9 - TSS region transcription start site region 107166
Tssr107167 11 23770827 to 23770846 19 - TSS region transcription start site region 107167
Tssr107168 11 23770864 to 23770877 13 - TSS region transcription start site region 107168
Tssr107169 11 23770920 to 23770925 5 - TSS region transcription start site region 107169
Tssr107170 11 23770933 to 23770942 9 - TSS region transcription start site region 107170
Tssr107171 11 23770953 to 23771028 75 - TSS region transcription start site region 107171
Tssr100643 11 23771145 to 23771164 19 + TSS region transcription start site region 100643
Tssr107172 11 23771199 to 23771210 11 - TSS region transcription start site region 107172
Tssr107173 11 23771230 to 23771264 34 - TSS region transcription start site region 107173
Tssr107174 11 23771279 to 23771293 14 - TSS region transcription start site region 107174
Tssr100644 11 23771584 to 23771598 14 + TSS region transcription start site region 100644
Tssr100645 11 23771618 to 23771627 9 + TSS region transcription start site region 100645
Gm23827 11 23776903 to 23777047 144 - snRNA gene predicted gene, 23827
Gm39612 11 23805437 to 23818936 13499 - lncRNA gene predicted gene, 39612
Tssr107175 11 23818861 to 23818886 25 - TSS region transcription start site region 107175
Tssr107176 11 23818887 to 23818907 20 - TSS region transcription start site region 107176
Tssr107177 11 23818952 to 23818974 22 - TSS region transcription start site region 107177
Tssr107178 11 23846514 to 23846531 17 - TSS region transcription start site region 107178
Papolg 11 23862646 to 23895253 32607 - protein coding gene poly(A) polymerase gamma
Cpgi2653 11 23894529 to 23895393 864 CpG island CpG island 2653
Gm12061 11 23894560 to 23895488 928 + antisense lncRNA gene predicted gene 12061
Tssr100646 11 23894759 to 23894775 16 + TSS region transcription start site region 100646
Tssr100647 11 23894779 to 23894791 12 + TSS region transcription start site region 100647
Tssr100648 11 23894796 to 23894803 7 + TSS region transcription start site region 100648
Tssr107179 11 23895175 to 23895189 14 - TSS region transcription start site region 107179
Tssr107180 11 23895208 to 23895280 72 - TSS region transcription start site region 107180
Gm12062 11 23928596 to 23928854 258 - pseudogene predicted gene 12062
Tssr3448 11 23961607 to 23961609 2 + TSS region transcription start site region 3448
Gm44381 11 24014655 to 24014759 104 + miRNA gene predicted gene, 44381
Gm33232 11 24033275 to 24076359 43084 - lncRNA gene predicted gene, 33232
Cpgi2654 11 24045988 to 24046247 259 CpG island CpG island 2654
A830031A19Rik 11 24048955 to 24075054 26099 - protein coding gene RIKEN cDNA A830031A19 gene
Cpgi2655 11 24049286 to 24049616 330 CpG island CpG island 2655
Tssr107181 11 24075700 to 24075702 2 - TSS region transcription start site region 107181
Cpgi2656 11 24076045 to 24078456 2411 CpG island CpG island 2656
Tssr100649 11 24076529 to 24076563 34 + TSS region transcription start site region 100649
Gm12063 11 24076559 to 24077367 808 + lincRNA gene predicted gene 12063
Tssr100650 11 24076612 to 24076628 16 + TSS region transcription start site region 100650
Tssr100651 11 24076906 to 24076924 18 + TSS region transcription start site region 100651
Tssr100652 11 24077147 to 24077163 16 + TSS region transcription start site region 100652
Tssr100653 11 24077565 to 24077612 47 + TSS region transcription start site region 100653
Tssr100654 11 24077742 to 24077794 52 + TSS region transcription start site region 100654
Tssr100655 11 24077800 to 24077810 10 + TSS region transcription start site region 100655
Tssr100656 11 24077940 to 24077951 11 + TSS region transcription start site region 100656
Tssr100657 11 24077965 to 24077974 9 + TSS region transcription start site region 100657
Tssr100658 11 24078022 to 24078076 54 + TSS region transcription start site region 100658
Bcl11a 11 24078056 to 24174123 96067 + protein coding gene B cell CLL/lymphoma 11A (zinc finger protein)
Tssr100659 11 24078078 to 24078096 18 + TSS region transcription start site region 100659
Tssr100660 11 24078111 to 24078134 23 + TSS region transcription start site region 100660
Tssr100661 11 24078206 to 24078219 13 + TSS region transcription start site region 100661
Tssr100662 11 24078229 to 24078268 39 + TSS region transcription start site region 100662
Tssr100663 11 24078270 to 24078290 20 + TSS region transcription start site region 100663
Tssr100664 11 24078291 to 24078323 32 + TSS region transcription start site region 100664
Tssr100665 11 24078353 to 24078379 26 + TSS region transcription start site region 100665
Cpgi2657 11 24078833 to 24079988 1155 CpG island CpG island 2657
Cpgi2658 11 24080508 to 24080912 404 CpG island CpG island 2658
Tssr100666 11 24080664 to 24080706 42 + TSS region transcription start site region 100666
Cpgi2659 11 24081176 to 24082153 977 CpG island CpG island 2659
Tssr100667 11 24098473 to 24098487 14 + TSS region transcription start site region 100667
Tssr100668 11 24098559 to 24098573 14 + TSS region transcription start site region 100668
Gm12064 11 24099688 to 24115405 15717 - antisense lncRNA gene predicted gene 12064
Tssr100669 11 24102587 to 24102591 4 + TSS region transcription start site region 100669
Tssr100670 11 24113739 to 24113752 13 + TSS region transcription start site region 100670
Tssr100671 11 24129066 to 24129072 6 + TSS region transcription start site region 100671
Tssr100672 11 24158300 to 24158311 11 + TSS region transcription start site region 100672
4930538E20Rik 11 24160528 to 24172824 12296 - antisense lncRNA gene RIKEN cDNA 4930538E20 gene
Cpgi2660 11 24163644 to 24164981 1337 CpG island CpG island 2660
Cpgi2661 11 24172719 to 24172929 210 CpG island CpG island 2661
Tssr107182 11 24172766 to 24172773 7 - TSS region transcription start site region 107182
Tssr107183 11 24172775 to 24172786 11 - TSS region transcription start site region 107183
Gm12065 11 24198737 to 24202624 3887 - lincRNA gene predicted gene 12065
Gm12066 11 24201418 to 24217601 16183 + lincRNA gene predicted gene 12066
Gm33440 11 24222209 to 24258739 36530 + lncRNA gene predicted gene, 33440
D11Mit152 11 24226273 to 24226405 132 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 152
Gm33379 11 24231310 to 24234419 3109 + lncRNA gene predicted gene, 33379
Tssr100673 11 24255699 to 24255715 16 + TSS region transcription start site region 100673
Tssr100674 11 24319966 to 24319970 4 + TSS region transcription start site region 100674
Tssr107184 11 24386032 to 24386033 1 - TSS region transcription start site region 107184
Gm12068 11 24426246 to 24722646 296400 + lincRNA gene predicted gene 12068
D11Hjk14 11 24434119 to 24434480 361 DNA segment DNA segment, Chr 11, H. Jockusch 14
4933430M04Rik 11 24481909 to 24569951 88042 + lincRNA gene RIKEN cDNA 4933430M04 gene
Gm12067 11 24552438 to 24553962 1524 - pseudogene predicted gene 12067
Gm22787 11 24553986 to 24554058 72 - snRNA gene predicted gene, 22787
Tssr3449 11 24638068 to 24638072 4 + TSS region transcription start site region 3449
Gm25507 11 24679568 to 24679711 143 - miRNA gene predicted gene, 25507
Gm10466 11 24721006 to 24730722 9716 - lincRNA gene predicted gene 10466
Cpgi2662 11 24824101 to 24824293 192 CpG island CpG island 2662
Tssr100675 11 24855426 to 24855430 4 + TSS region transcription start site region 100675
Gm12665 11 24913237 to 24926385 13148 - lincRNA gene predicted gene 12665
Tssr107185 11 24926045 to 24926061 16 - TSS region transcription start site region 107185
Tnbs2 11 24948052 to 35235853 10287801 QTL tri-nitrobenzene sulfonic acid susceptible 2
D11Mit151 11 24948052 to 24948191 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 151
Gm39613 11 24951560 to 24954764 3204 + lncRNA gene predicted gene, 39613
D11Hjk25 11 25083717 to 25083915 198 DNA segment DNA segment, Chr 11, H. Jockusch 25
D11Mit81 11 25178679 to 25178865 186 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 81
Gm24255 11 25238588 to 25238715 127 - snoRNA gene predicted gene, 24255
Gm12069 11 25301263 to 25322786 21523 + lincRNA gene predicted gene 12069
4933427E13Rik 11 25326107 to 25367137 41030 + lincRNA gene RIKEN cDNA 4933427E13 gene