Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23560437-24063936

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136
Cpgi2650 11 23632947 to 23633958 1011 CpG island CpG island 2650
Tssr107137 11 23633532 to 23633576 44 - TSS region transcription start site region 107137
Tssr107138 11 23633592 to 23633601 9 - TSS region transcription start site region 107138
Tssr107139 11 23633604 to 23633620 16 - TSS region transcription start site region 107139
Tssr107140 11 23633621 to 23633638 17 - TSS region transcription start site region 107140
Tssr107141 11 23633646 to 23633669 23 - TSS region transcription start site region 107141
Tssr3447 11 23633672 to 23633675 3 - TSS region transcription start site region 3447
Tssr107142 11 23646049 to 23646063 14 - TSS region transcription start site region 107142
Pex13 11 23646479 to 23665935 19456 - protein coding gene peroxisomal biogenesis factor 13
Cpgi2651 11 23665308 to 23666547 1239 CpG island CpG island 2651
Tssr100631 11 23665410 to 23665438 28 + TSS region transcription start site region 100631
Tssr100632 11 23665615 to 23665623 8 + TSS region transcription start site region 100632
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107143 11 23665862 to 23665937 75 - TSS region transcription start site region 107143
Tssr100633 11 23666122 to 23666202 80 + TSS region transcription start site region 100633
Tssr100634 11 23666205 to 23666225 20 + TSS region transcription start site region 100634
Tssr100635 11 23666378 to 23666430 52 + TSS region transcription start site region 100635
Tssr100636 11 23666479 to 23666496 17 + TSS region transcription start site region 100636
5830495A06Rik 11 23697125 to 23698794 1669 unclassified gene RIKEN cDNA 5830495A06 gene
Tssr100637 11 23699578 to 23699582 4 + TSS region transcription start site region 100637
9430034F23Rik 11 23712731 to 23715080 2349 unclassified non-coding RNA gene RIKEN cDNA 9430034F23 gene
Tssr100638 11 23728822 to 23728828 6 + TSS region transcription start site region 100638
Tssr107144 11 23739461 to 23739473 12 - TSS region transcription start site region 107144
Tssr107145 11 23739752 to 23739764 12 - TSS region transcription start site region 107145
Tssr107146 11 23739821 to 23739838 17 - TSS region transcription start site region 107146
Tssr107147 11 23739869 to 23739877 8 - TSS region transcription start site region 107147
Tssr107148 11 23739930 to 23739952 22 - TSS region transcription start site region 107148
Tssr107149 11 23739955 to 23739985 30 - TSS region transcription start site region 107149
Tssr107150 11 23740021 to 23740030 9 - TSS region transcription start site region 107150
Tssr107151 11 23740181 to 23740184 3 - TSS region transcription start site region 107151
Tssr107152 11 23740832 to 23740842 10 - TSS region transcription start site region 107152
Tssr107153 11 23740911 to 23740922 11 - TSS region transcription start site region 107153
Tssr107154 11 23740953 to 23740984 31 - TSS region transcription start site region 107154
Tssr107155 11 23741118 to 23741130 12 - TSS region transcription start site region 107155
Tssr107156 11 23741382 to 23741398 16 - TSS region transcription start site region 107156
Rel 11 23741729 to 23770970 29241 - protein coding gene reticuloendotheliosis oncogene
Tssr107157 11 23741881 to 23741889 8 - TSS region transcription start site region 107157
Tssr107158 11 23745581 to 23745590 9 - TSS region transcription start site region 107158
Tssr107159 11 23746730 to 23746750 20 - TSS region transcription start site region 107159
Tssr107160 11 23746796 to 23746807 11 - TSS region transcription start site region 107160
Tssr107161 11 23748455 to 23748462 7 - TSS region transcription start site region 107161
Tssr100639 11 23754530 to 23754553 23 + TSS region transcription start site region 100639
Tssr107162 11 23758396 to 23758399 3 - TSS region transcription start site region 107162
Tssr107163 11 23762091 to 23762095 4 - TSS region transcription start site region 107163
Tssr100640 11 23769793 to 23769804 11 + TSS region transcription start site region 100640
Tssr100641 11 23769810 to 23769821 11 + TSS region transcription start site region 100641
Tssr100642 11 23770272 to 23770293 21 + TSS region transcription start site region 100642
Cpgi2652 11 23770488 to 23771728 1240 CpG island CpG island 2652
Tssr107164 11 23770736 to 23770748 12 - TSS region transcription start site region 107164
Tssr107165 11 23770750 to 23770789 39 - TSS region transcription start site region 107165
Tssr107166 11 23770799 to 23770808 9 - TSS region transcription start site region 107166
Tssr107167 11 23770827 to 23770846 19 - TSS region transcription start site region 107167
Tssr107168 11 23770864 to 23770877 13 - TSS region transcription start site region 107168
Tssr107169 11 23770920 to 23770925 5 - TSS region transcription start site region 107169
Tssr107170 11 23770933 to 23770942 9 - TSS region transcription start site region 107170
Tssr107171 11 23770953 to 23771028 75 - TSS region transcription start site region 107171
Tssr100643 11 23771145 to 23771164 19 + TSS region transcription start site region 100643
Tssr107172 11 23771199 to 23771210 11 - TSS region transcription start site region 107172
Tssr107173 11 23771230 to 23771264 34 - TSS region transcription start site region 107173
Tssr107174 11 23771279 to 23771293 14 - TSS region transcription start site region 107174
Tssr100644 11 23771584 to 23771598 14 + TSS region transcription start site region 100644
Tssr100645 11 23771618 to 23771627 9 + TSS region transcription start site region 100645
Gm23827 11 23776903 to 23777047 144 - snRNA gene predicted gene, 23827
Gm39612 11 23805437 to 23818936 13499 - lncRNA gene predicted gene, 39612
Tssr107175 11 23818861 to 23818886 25 - TSS region transcription start site region 107175
Tssr107176 11 23818887 to 23818907 20 - TSS region transcription start site region 107176
Tssr107177 11 23818952 to 23818974 22 - TSS region transcription start site region 107177
Tssr107178 11 23846514 to 23846531 17 - TSS region transcription start site region 107178
Papolg 11 23862646 to 23895253 32607 - protein coding gene poly(A) polymerase gamma
Cpgi2653 11 23894529 to 23895393 864 CpG island CpG island 2653
Gm12061 11 23894560 to 23895488 928 + antisense lncRNA gene predicted gene 12061
Tssr100646 11 23894759 to 23894775 16 + TSS region transcription start site region 100646
Tssr100647 11 23894779 to 23894791 12 + TSS region transcription start site region 100647
Tssr100648 11 23894796 to 23894803 7 + TSS region transcription start site region 100648
Tssr107179 11 23895175 to 23895189 14 - TSS region transcription start site region 107179
Tssr107180 11 23895208 to 23895280 72 - TSS region transcription start site region 107180
Gm12062 11 23928596 to 23928854 258 - pseudogene predicted gene 12062
Tssr3448 11 23961607 to 23961609 2 + TSS region transcription start site region 3448
Gm44381 11 24014655 to 24014759 104 + miRNA gene predicted gene, 44381
Gm33232 11 24033275 to 24076359 43084 - lncRNA gene predicted gene, 33232
Cpgi2654 11 24045988 to 24046247 259 CpG island CpG island 2654
A830031A19Rik 11 24048955 to 24075054 26099 - protein coding gene RIKEN cDNA A830031A19 gene
Cpgi2655 11 24049286 to 24049616 330 CpG island CpG island 2655