Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23434560-24355488

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135
Selenok-ps1 11 23558058 to 23558842 784 - pseudogene selenoprotein K, pseudogene 1
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136
Cpgi2650 11 23632947 to 23633958 1011 CpG island CpG island 2650
Tssr107137 11 23633532 to 23633576 44 - TSS region transcription start site region 107137
Tssr107138 11 23633592 to 23633601 9 - TSS region transcription start site region 107138
Tssr107139 11 23633604 to 23633620 16 - TSS region transcription start site region 107139
Tssr107140 11 23633621 to 23633638 17 - TSS region transcription start site region 107140
Tssr107141 11 23633646 to 23633669 23 - TSS region transcription start site region 107141
Tssr3447 11 23633672 to 23633675 3 - TSS region transcription start site region 3447
Tssr107142 11 23646049 to 23646063 14 - TSS region transcription start site region 107142
Pex13 11 23646479 to 23665935 19456 - protein coding gene peroxisomal biogenesis factor 13
Cpgi2651 11 23665308 to 23666547 1239 CpG island CpG island 2651
Tssr100631 11 23665410 to 23665438 28 + TSS region transcription start site region 100631
Tssr100632 11 23665615 to 23665623 8 + TSS region transcription start site region 100632
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107143 11 23665862 to 23665937 75 - TSS region transcription start site region 107143
Tssr100633 11 23666122 to 23666202 80 + TSS region transcription start site region 100633
Tssr100634 11 23666205 to 23666225 20 + TSS region transcription start site region 100634
Tssr100635 11 23666378 to 23666430 52 + TSS region transcription start site region 100635
Tssr100636 11 23666479 to 23666496 17 + TSS region transcription start site region 100636
5830495A06Rik 11 23697125 to 23698794 1669 unclassified gene RIKEN cDNA 5830495A06 gene
Tssr100637 11 23699578 to 23699582 4 + TSS region transcription start site region 100637
9430034F23Rik 11 23712731 to 23715080 2349 unclassified non-coding RNA gene RIKEN cDNA 9430034F23 gene
Tssr100638 11 23728822 to 23728828 6 + TSS region transcription start site region 100638
Tssr107144 11 23739461 to 23739473 12 - TSS region transcription start site region 107144
Tssr107145 11 23739752 to 23739764 12 - TSS region transcription start site region 107145
Tssr107146 11 23739821 to 23739838 17 - TSS region transcription start site region 107146
Tssr107147 11 23739869 to 23739877 8 - TSS region transcription start site region 107147
Tssr107148 11 23739930 to 23739952 22 - TSS region transcription start site region 107148
Tssr107149 11 23739955 to 23739985 30 - TSS region transcription start site region 107149
Tssr107150 11 23740021 to 23740030 9 - TSS region transcription start site region 107150
Tssr107151 11 23740181 to 23740184 3 - TSS region transcription start site region 107151
Tssr107152 11 23740832 to 23740842 10 - TSS region transcription start site region 107152
Tssr107153 11 23740911 to 23740922 11 - TSS region transcription start site region 107153
Tssr107154 11 23740953 to 23740984 31 - TSS region transcription start site region 107154
Tssr107155 11 23741118 to 23741130 12 - TSS region transcription start site region 107155
Tssr107156 11 23741382 to 23741398 16 - TSS region transcription start site region 107156
Rel 11 23741729 to 23770970 29241 - protein coding gene reticuloendotheliosis oncogene
Tssr107157 11 23741881 to 23741889 8 - TSS region transcription start site region 107157
Tssr107158 11 23745581 to 23745590 9 - TSS region transcription start site region 107158
Tssr107159 11 23746730 to 23746750 20 - TSS region transcription start site region 107159
Tssr107160 11 23746796 to 23746807 11 - TSS region transcription start site region 107160
Tssr107161 11 23748455 to 23748462 7 - TSS region transcription start site region 107161
Tssr100639 11 23754530 to 23754553 23 + TSS region transcription start site region 100639
Tssr107162 11 23758396 to 23758399 3 - TSS region transcription start site region 107162
Tssr107163 11 23762091 to 23762095 4 - TSS region transcription start site region 107163
Tssr100640 11 23769793 to 23769804 11 + TSS region transcription start site region 100640
Tssr100641 11 23769810 to 23769821 11 + TSS region transcription start site region 100641
Tssr100642 11 23770272 to 23770293 21 + TSS region transcription start site region 100642
Cpgi2652 11 23770488 to 23771728 1240 CpG island CpG island 2652
Tssr107164 11 23770736 to 23770748 12 - TSS region transcription start site region 107164
Tssr107165 11 23770750 to 23770789 39 - TSS region transcription start site region 107165
Tssr107166 11 23770799 to 23770808 9 - TSS region transcription start site region 107166
Tssr107167 11 23770827 to 23770846 19 - TSS region transcription start site region 107167
Tssr107168 11 23770864 to 23770877 13 - TSS region transcription start site region 107168
Tssr107169 11 23770920 to 23770925 5 - TSS region transcription start site region 107169
Tssr107170 11 23770933 to 23770942 9 - TSS region transcription start site region 107170
Tssr107171 11 23770953 to 23771028 75 - TSS region transcription start site region 107171
Tssr100643 11 23771145 to 23771164 19 + TSS region transcription start site region 100643
Tssr107172 11 23771199 to 23771210 11 - TSS region transcription start site region 107172
Tssr107173 11 23771230 to 23771264 34 - TSS region transcription start site region 107173
Tssr107174 11 23771279 to 23771293 14 - TSS region transcription start site region 107174
Tssr100644 11 23771584 to 23771598 14 + TSS region transcription start site region 100644
Tssr100645 11 23771618 to 23771627 9 + TSS region transcription start site region 100645
Gm23827 11 23776903 to 23777047 144 - snRNA gene predicted gene, 23827
Gm39612 11 23805437 to 23818936 13499 - lncRNA gene predicted gene, 39612
Tssr107175 11 23818861 to 23818886 25 - TSS region transcription start site region 107175
Tssr107176 11 23818887 to 23818907 20 - TSS region transcription start site region 107176
Tssr107177 11 23818952 to 23818974 22 - TSS region transcription start site region 107177
Tssr107178 11 23846514 to 23846531 17 - TSS region transcription start site region 107178
Papolg 11 23862646 to 23895253 32607 - protein coding gene poly(A) polymerase gamma
Cpgi2653 11 23894529 to 23895393 864 CpG island CpG island 2653
Gm12061 11 23894560 to 23895488 928 + antisense lncRNA gene predicted gene 12061
Tssr100646 11 23894759 to 23894775 16 + TSS region transcription start site region 100646
Tssr100647 11 23894779 to 23894791 12 + TSS region transcription start site region 100647
Tssr100648 11 23894796 to 23894803 7 + TSS region transcription start site region 100648
Tssr107179 11 23895175 to 23895189 14 - TSS region transcription start site region 107179
Tssr107180 11 23895208 to 23895280 72 - TSS region transcription start site region 107180
Gm12062 11 23928596 to 23928854 258 - pseudogene predicted gene 12062
Tssr3448 11 23961607 to 23961609 2 + TSS region transcription start site region 3448
Gm44381 11 24014655 to 24014759 104 + miRNA gene predicted gene, 44381
Gm33232 11 24033275 to 24076359 43084 - lncRNA gene predicted gene, 33232
Cpgi2654 11 24045988 to 24046247 259 CpG island CpG island 2654
A830031A19Rik 11 24048955 to 24075054 26099 - protein coding gene RIKEN cDNA A830031A19 gene
Cpgi2655 11 24049286 to 24049616 330 CpG island CpG island 2655
Tssr107181 11 24075700 to 24075702 2 - TSS region transcription start site region 107181
Cpgi2656 11 24076045 to 24078456 2411 CpG island CpG island 2656
Tssr100649 11 24076529 to 24076563 34 + TSS region transcription start site region 100649
Gm12063 11 24076559 to 24077367 808 + lincRNA gene predicted gene 12063
Tssr100650 11 24076612 to 24076628 16 + TSS region transcription start site region 100650
Tssr100651 11 24076906 to 24076924 18 + TSS region transcription start site region 100651
Tssr100652 11 24077147 to 24077163 16 + TSS region transcription start site region 100652
Tssr100653 11 24077565 to 24077612 47 + TSS region transcription start site region 100653
Tssr100654 11 24077742 to 24077794 52 + TSS region transcription start site region 100654
Tssr100655 11 24077800 to 24077810 10 + TSS region transcription start site region 100655
Tssr100656 11 24077940 to 24077951 11 + TSS region transcription start site region 100656
Tssr100657 11 24077965 to 24077974 9 + TSS region transcription start site region 100657
Tssr100658 11 24078022 to 24078076 54 + TSS region transcription start site region 100658
Bcl11a 11 24078056 to 24174123 96067 + protein coding gene B cell CLL/lymphoma 11A (zinc finger protein)
Tssr100659 11 24078078 to 24078096 18 + TSS region transcription start site region 100659
Tssr100660 11 24078111 to 24078134 23 + TSS region transcription start site region 100660
Tssr100661 11 24078206 to 24078219 13 + TSS region transcription start site region 100661
Tssr100662 11 24078229 to 24078268 39 + TSS region transcription start site region 100662
Tssr100663 11 24078270 to 24078290 20 + TSS region transcription start site region 100663
Tssr100664 11 24078291 to 24078323 32 + TSS region transcription start site region 100664
Tssr100665 11 24078353 to 24078379 26 + TSS region transcription start site region 100665
Cpgi2657 11 24078833 to 24079988 1155 CpG island CpG island 2657
Cpgi2658 11 24080508 to 24080912 404 CpG island CpG island 2658
Tssr100666 11 24080664 to 24080706 42 + TSS region transcription start site region 100666
Cpgi2659 11 24081176 to 24082153 977 CpG island CpG island 2659
Tssr100667 11 24098473 to 24098487 14 + TSS region transcription start site region 100667
Tssr100668 11 24098559 to 24098573 14 + TSS region transcription start site region 100668
Gm12064 11 24099688 to 24115405 15717 - antisense lncRNA gene predicted gene 12064
Tssr100669 11 24102587 to 24102591 4 + TSS region transcription start site region 100669
Tssr100670 11 24113739 to 24113752 13 + TSS region transcription start site region 100670
Tssr100671 11 24129066 to 24129072 6 + TSS region transcription start site region 100671
Tssr100672 11 24158300 to 24158311 11 + TSS region transcription start site region 100672
4930538E20Rik 11 24160528 to 24172824 12296 - antisense lncRNA gene RIKEN cDNA 4930538E20 gene
Cpgi2660 11 24163644 to 24164981 1337 CpG island CpG island 2660
Cpgi2661 11 24172719 to 24172929 210 CpG island CpG island 2661
Tssr107182 11 24172766 to 24172773 7 - TSS region transcription start site region 107182
Tssr107183 11 24172775 to 24172786 11 - TSS region transcription start site region 107183
Gm12065 11 24198737 to 24202624 3887 - lincRNA gene predicted gene 12065
Gm12066 11 24201418 to 24217601 16183 + lincRNA gene predicted gene 12066
Gm33440 11 24222209 to 24258739 36530 + lncRNA gene predicted gene, 33440
D11Mit152 11 24226273 to 24226405 132 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 152
Gm33379 11 24231310 to 24234419 3109 + lncRNA gene predicted gene, 33379
Tssr100673 11 24255699 to 24255715 16 + TSS region transcription start site region 100673
Tssr100674 11 24319966 to 24319970 4 + TSS region transcription start site region 100674