Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23400181-24080184

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Tssr100625 11 23401595 to 23401605 10 + TSS region transcription start site region 100625
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135
Selenok-ps1 11 23558058 to 23558842 784 - pseudogene selenoprotein K, pseudogene 1
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136
Cpgi2650 11 23632947 to 23633958 1011 CpG island CpG island 2650
Tssr107137 11 23633532 to 23633576 44 - TSS region transcription start site region 107137
Tssr107138 11 23633592 to 23633601 9 - TSS region transcription start site region 107138
Tssr107139 11 23633604 to 23633620 16 - TSS region transcription start site region 107139
Tssr107140 11 23633621 to 23633638 17 - TSS region transcription start site region 107140
Tssr107141 11 23633646 to 23633669 23 - TSS region transcription start site region 107141
Tssr3447 11 23633672 to 23633675 3 - TSS region transcription start site region 3447
Tssr107142 11 23646049 to 23646063 14 - TSS region transcription start site region 107142
Pex13 11 23646479 to 23665935 19456 - protein coding gene peroxisomal biogenesis factor 13
Cpgi2651 11 23665308 to 23666547 1239 CpG island CpG island 2651
Tssr100631 11 23665410 to 23665438 28 + TSS region transcription start site region 100631
Tssr100632 11 23665615 to 23665623 8 + TSS region transcription start site region 100632
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107143 11 23665862 to 23665937 75 - TSS region transcription start site region 107143
Tssr100633 11 23666122 to 23666202 80 + TSS region transcription start site region 100633
Tssr100634 11 23666205 to 23666225 20 + TSS region transcription start site region 100634
Tssr100635 11 23666378 to 23666430 52 + TSS region transcription start site region 100635
Tssr100636 11 23666479 to 23666496 17 + TSS region transcription start site region 100636
5830495A06Rik 11 23697125 to 23698794 1669 unclassified gene RIKEN cDNA 5830495A06 gene
Tssr100637 11 23699578 to 23699582 4 + TSS region transcription start site region 100637
9430034F23Rik 11 23712731 to 23715080 2349 unclassified non-coding RNA gene RIKEN cDNA 9430034F23 gene
Tssr100638 11 23728822 to 23728828 6 + TSS region transcription start site region 100638
Tssr107144 11 23739461 to 23739473 12 - TSS region transcription start site region 107144
Tssr107145 11 23739752 to 23739764 12 - TSS region transcription start site region 107145
Tssr107146 11 23739821 to 23739838 17 - TSS region transcription start site region 107146
Tssr107147 11 23739869 to 23739877 8 - TSS region transcription start site region 107147
Tssr107148 11 23739930 to 23739952 22 - TSS region transcription start site region 107148
Tssr107149 11 23739955 to 23739985 30 - TSS region transcription start site region 107149
Tssr107150 11 23740021 to 23740030 9 - TSS region transcription start site region 107150
Tssr107151 11 23740181 to 23740184 3 - TSS region transcription start site region 107151
Tssr107152 11 23740832 to 23740842 10 - TSS region transcription start site region 107152
Tssr107153 11 23740911 to 23740922 11 - TSS region transcription start site region 107153
Tssr107154 11 23740953 to 23740984 31 - TSS region transcription start site region 107154
Tssr107155 11 23741118 to 23741130 12 - TSS region transcription start site region 107155
Tssr107156 11 23741382 to 23741398 16 - TSS region transcription start site region 107156
Rel 11 23741729 to 23770970 29241 - protein coding gene reticuloendotheliosis oncogene
Tssr107157 11 23741881 to 23741889 8 - TSS region transcription start site region 107157
Tssr107158 11 23745581 to 23745590 9 - TSS region transcription start site region 107158
Tssr107159 11 23746730 to 23746750 20 - TSS region transcription start site region 107159
Tssr107160 11 23746796 to 23746807 11 - TSS region transcription start site region 107160
Tssr107161 11 23748455 to 23748462 7 - TSS region transcription start site region 107161
Tssr100639 11 23754530 to 23754553 23 + TSS region transcription start site region 100639
Tssr107162 11 23758396 to 23758399 3 - TSS region transcription start site region 107162
Tssr107163 11 23762091 to 23762095 4 - TSS region transcription start site region 107163
Tssr100640 11 23769793 to 23769804 11 + TSS region transcription start site region 100640
Tssr100641 11 23769810 to 23769821 11 + TSS region transcription start site region 100641
Tssr100642 11 23770272 to 23770293 21 + TSS region transcription start site region 100642
Cpgi2652 11 23770488 to 23771728 1240 CpG island CpG island 2652
Tssr107164 11 23770736 to 23770748 12 - TSS region transcription start site region 107164
Tssr107165 11 23770750 to 23770789 39 - TSS region transcription start site region 107165
Tssr107166 11 23770799 to 23770808 9 - TSS region transcription start site region 107166
Tssr107167 11 23770827 to 23770846 19 - TSS region transcription start site region 107167
Tssr107168 11 23770864 to 23770877 13 - TSS region transcription start site region 107168
Tssr107169 11 23770920 to 23770925 5 - TSS region transcription start site region 107169
Tssr107170 11 23770933 to 23770942 9 - TSS region transcription start site region 107170
Tssr107171 11 23770953 to 23771028 75 - TSS region transcription start site region 107171
Tssr100643 11 23771145 to 23771164 19 + TSS region transcription start site region 100643
Tssr107172 11 23771199 to 23771210 11 - TSS region transcription start site region 107172
Tssr107173 11 23771230 to 23771264 34 - TSS region transcription start site region 107173
Tssr107174 11 23771279 to 23771293 14 - TSS region transcription start site region 107174
Tssr100644 11 23771584 to 23771598 14 + TSS region transcription start site region 100644
Tssr100645 11 23771618 to 23771627 9 + TSS region transcription start site region 100645
Gm23827 11 23776903 to 23777047 144 - snRNA gene predicted gene, 23827
Gm39612 11 23805437 to 23818936 13499 - lncRNA gene predicted gene, 39612
Tssr107175 11 23818861 to 23818886 25 - TSS region transcription start site region 107175
Tssr107176 11 23818887 to 23818907 20 - TSS region transcription start site region 107176
Tssr107177 11 23818952 to 23818974 22 - TSS region transcription start site region 107177
Tssr107178 11 23846514 to 23846531 17 - TSS region transcription start site region 107178
Papolg 11 23862646 to 23895253 32607 - protein coding gene poly(A) polymerase gamma
Cpgi2653 11 23894529 to 23895393 864 CpG island CpG island 2653
Gm12061 11 23894560 to 23895488 928 + antisense lncRNA gene predicted gene 12061
Tssr100646 11 23894759 to 23894775 16 + TSS region transcription start site region 100646
Tssr100647 11 23894779 to 23894791 12 + TSS region transcription start site region 100647
Tssr100648 11 23894796 to 23894803 7 + TSS region transcription start site region 100648
Tssr107179 11 23895175 to 23895189 14 - TSS region transcription start site region 107179
Tssr107180 11 23895208 to 23895280 72 - TSS region transcription start site region 107180
Gm12062 11 23928596 to 23928854 258 - pseudogene predicted gene 12062
Tssr3448 11 23961607 to 23961609 2 + TSS region transcription start site region 3448
Gm44381 11 24014655 to 24014759 104 + miRNA gene predicted gene, 44381
Gm33232 11 24033275 to 24076359 43084 - lncRNA gene predicted gene, 33232
Cpgi2654 11 24045988 to 24046247 259 CpG island CpG island 2654
A830031A19Rik 11 24048955 to 24075054 26099 - protein coding gene RIKEN cDNA A830031A19 gene
Cpgi2655 11 24049286 to 24049616 330 CpG island CpG island 2655
Tssr107181 11 24075700 to 24075702 2 - TSS region transcription start site region 107181
Cpgi2656 11 24076045 to 24078456 2411 CpG island CpG island 2656
Tssr100649 11 24076529 to 24076563 34 + TSS region transcription start site region 100649
Gm12063 11 24076559 to 24077367 808 + lincRNA gene predicted gene 12063
Tssr100650 11 24076612 to 24076628 16 + TSS region transcription start site region 100650
Tssr100651 11 24076906 to 24076924 18 + TSS region transcription start site region 100651
Tssr100652 11 24077147 to 24077163 16 + TSS region transcription start site region 100652
Tssr100653 11 24077565 to 24077612 47 + TSS region transcription start site region 100653
Tssr100654 11 24077742 to 24077794 52 + TSS region transcription start site region 100654
Tssr100655 11 24077800 to 24077810 10 + TSS region transcription start site region 100655
Tssr100656 11 24077940 to 24077951 11 + TSS region transcription start site region 100656
Tssr100657 11 24077965 to 24077974 9 + TSS region transcription start site region 100657
Tssr100658 11 24078022 to 24078076 54 + TSS region transcription start site region 100658
Bcl11a 11 24078056 to 24174123 96067 + protein coding gene B cell CLL/lymphoma 11A (zinc finger protein)
Tssr100659 11 24078078 to 24078096 18 + TSS region transcription start site region 100659
Tssr100660 11 24078111 to 24078134 23 + TSS region transcription start site region 100660
Tssr100661 11 24078206 to 24078219 13 + TSS region transcription start site region 100661
Tssr100662 11 24078229 to 24078268 39 + TSS region transcription start site region 100662
Tssr100663 11 24078270 to 24078290 20 + TSS region transcription start site region 100663
Tssr100664 11 24078291 to 24078323 32 + TSS region transcription start site region 100664
Tssr100665 11 24078353 to 24078379 26 + TSS region transcription start site region 100665
Cpgi2657 11 24078833 to 24079988 1155 CpG island CpG island 2657