Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23116595-23686605

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr100607 11 23152083 to 23152086 3 + TSS region transcription start site region 100607
Tssr100608 11 23152099 to 23152106 7 + TSS region transcription start site region 100608
Tssr100609 11 23152115 to 23152124 9 + TSS region transcription start site region 100609
Tssr100610 11 23152125 to 23152133 8 + TSS region transcription start site region 100610
Tssr100611 11 23152135 to 23152145 10 + TSS region transcription start site region 100611
1700061J23Rik 11 23152140 to 23166375 14235 + lincRNA gene RIKEN cDNA 1700061J23 gene
Gm24398 11 23172798 to 23172906 108 - snoRNA gene predicted gene, 24398
D11Mit340 11 23238865 to 23238998 133 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-340
Cpgi2647 11 23255094 to 23257674 2580 CpG island CpG island 2647
Xpo1 11 23255913 to 23297597 41684 + protein coding gene exportin 1
Tssr100612 11 23255920 to 23255976 56 + TSS region transcription start site region 100612
Tssr100613 11 23255980 to 23256000 20 + TSS region transcription start site region 100613
Tssr100614 11 23256001 to 23256105 104 + TSS region transcription start site region 100614
Tssr100615 11 23256566 to 23256580 14 + TSS region transcription start site region 100615
Tssr100616 11 23257456 to 23257464 8 + TSS region transcription start site region 100616
Tssr107126 11 23257478 to 23257487 9 - TSS region transcription start site region 107126
Tssr100617 11 23269613 to 23269620 7 + TSS region transcription start site region 100617
Tssr100618 11 23284303 to 23284320 17 + TSS region transcription start site region 100618
Tssr100619 11 23284655 to 23284669 14 + TSS region transcription start site region 100619
Gm3718 11 23304161 to 23306596 2435 - unclassified gene predicted gene 3718
Cpgi2648 11 23305700 to 23307519 1819 CpG island CpG island 2648
Tssr107127 11 23306302 to 23306316 14 - TSS region transcription start site region 107127
Tssr100620 11 23306428 to 23306472 44 + TSS region transcription start site region 100620
Tssr100621 11 23306499 to 23306602 103 + TSS region transcription start site region 100621
Tssr3446 11 23306690 to 23306718 28 + TSS region transcription start site region 3446
Tssr100622 11 23306736 to 23306747 11 + TSS region transcription start site region 100622
Tssr100623 11 23306884 to 23306906 22 + TSS region transcription start site region 100623
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Tssr100624 11 23306910 to 23306937 27 + TSS region transcription start site region 100624
Tssr100625 11 23401595 to 23401605 10 + TSS region transcription start site region 100625
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135
Selenok-ps1 11 23558058 to 23558842 784 - pseudogene selenoprotein K, pseudogene 1
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136
Cpgi2650 11 23632947 to 23633958 1011 CpG island CpG island 2650
Tssr107137 11 23633532 to 23633576 44 - TSS region transcription start site region 107137
Tssr107138 11 23633592 to 23633601 9 - TSS region transcription start site region 107138
Tssr107139 11 23633604 to 23633620 16 - TSS region transcription start site region 107139
Tssr107140 11 23633621 to 23633638 17 - TSS region transcription start site region 107140
Tssr107141 11 23633646 to 23633669 23 - TSS region transcription start site region 107141
Tssr3447 11 23633672 to 23633675 3 - TSS region transcription start site region 3447
Tssr107142 11 23646049 to 23646063 14 - TSS region transcription start site region 107142
Pex13 11 23646479 to 23665935 19456 - protein coding gene peroxisomal biogenesis factor 13
Cpgi2651 11 23665308 to 23666547 1239 CpG island CpG island 2651
Tssr100631 11 23665410 to 23665438 28 + TSS region transcription start site region 100631
Tssr100632 11 23665615 to 23665623 8 + TSS region transcription start site region 100632
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107143 11 23665862 to 23665937 75 - TSS region transcription start site region 107143
Tssr100633 11 23666122 to 23666202 80 + TSS region transcription start site region 100633
Tssr100634 11 23666205 to 23666225 20 + TSS region transcription start site region 100634
Tssr100635 11 23666378 to 23666430 52 + TSS region transcription start site region 100635
Tssr100636 11 23666479 to 23666496 17 + TSS region transcription start site region 100636