Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23056428-23556472

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23740 11 23063133 to 23063232 99 - rRNA gene predicted gene, 23740
Cpgi2646 11 23067478 to 23068178 700 CpG island CpG island 2646
Tssr100606 11 23067992 to 23068005 13 + TSS region transcription start site region 100606
Gm12059 11 23067998 to 23075574 7576 + unclassified non-coding RNA gene predicted gene 12059
Tssr107125 11 23069222 to 23069228 6 - TSS region transcription start site region 107125
Gm39610 11 23091879 to 23103869 11990 - lncRNA gene predicted gene, 39610
Tssr100607 11 23152083 to 23152086 3 + TSS region transcription start site region 100607
Tssr100608 11 23152099 to 23152106 7 + TSS region transcription start site region 100608
Tssr100609 11 23152115 to 23152124 9 + TSS region transcription start site region 100609
Tssr100610 11 23152125 to 23152133 8 + TSS region transcription start site region 100610
Tssr100611 11 23152135 to 23152145 10 + TSS region transcription start site region 100611
1700061J23Rik 11 23152140 to 23166375 14235 + lincRNA gene RIKEN cDNA 1700061J23 gene
Gm24398 11 23172798 to 23172906 108 - snoRNA gene predicted gene, 24398
D11Mit340 11 23238865 to 23238998 133 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-340
Cpgi2647 11 23255094 to 23257674 2580 CpG island CpG island 2647
Xpo1 11 23255913 to 23297597 41684 + protein coding gene exportin 1
Tssr100612 11 23255920 to 23255976 56 + TSS region transcription start site region 100612
Tssr100613 11 23255980 to 23256000 20 + TSS region transcription start site region 100613
Tssr100614 11 23256001 to 23256105 104 + TSS region transcription start site region 100614
Tssr100615 11 23256566 to 23256580 14 + TSS region transcription start site region 100615
Tssr100616 11 23257456 to 23257464 8 + TSS region transcription start site region 100616
Tssr107126 11 23257478 to 23257487 9 - TSS region transcription start site region 107126
Tssr100617 11 23269613 to 23269620 7 + TSS region transcription start site region 100617
Tssr100618 11 23284303 to 23284320 17 + TSS region transcription start site region 100618
Tssr100619 11 23284655 to 23284669 14 + TSS region transcription start site region 100619
Gm3718 11 23304161 to 23306596 2435 - unclassified gene predicted gene 3718
Cpgi2648 11 23305700 to 23307519 1819 CpG island CpG island 2648
Tssr107127 11 23306302 to 23306316 14 - TSS region transcription start site region 107127
Tssr100620 11 23306428 to 23306472 44 + TSS region transcription start site region 100620
Tssr100621 11 23306499 to 23306602 103 + TSS region transcription start site region 100621
Tssr3446 11 23306690 to 23306718 28 + TSS region transcription start site region 3446
Tssr100622 11 23306736 to 23306747 11 + TSS region transcription start site region 100622
Tssr100623 11 23306884 to 23306906 22 + TSS region transcription start site region 100623
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Tssr100624 11 23306910 to 23306937 27 + TSS region transcription start site region 100624
Tssr100625 11 23401595 to 23401605 10 + TSS region transcription start site region 100625
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135