Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:23002867-23992962

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cct4 11 22990593 to 23003336 12743 + protein coding gene chaperonin containing Tcp1, subunit 4 (delta)
Tssr100597 11 23007523 to 23007536 13 + TSS region transcription start site region 100597
Fam161a 11 23007531 to 23030788 23257 + protein coding gene family with sequence similarity 161, member A
Cpgi2645 11 23007989 to 23008741 752 CpG island CpG island 2645
Tssr100598 11 23008337 to 23008391 54 + TSS region transcription start site region 100598
Tssr100599 11 23008420 to 23008500 80 + TSS region transcription start site region 100599
Tssr100600 11 23008521 to 23008532 11 + TSS region transcription start site region 100600
Tssr100601 11 23008542 to 23008553 11 + TSS region transcription start site region 100601
Tssr100602 11 23010976 to 23011001 25 + TSS region transcription start site region 100602
Tssr3445 11 23020281 to 23020288 7 + TSS region transcription start site region 3445
Tssr100603 11 23020346 to 23020355 9 + TSS region transcription start site region 100603
Tssr100604 11 23020464 to 23020486 22 + TSS region transcription start site region 100604
Tssr100605 11 23032837 to 23032849 12 + TSS region transcription start site region 100605
Gm23740 11 23063133 to 23063232 99 - rRNA gene predicted gene, 23740
Cpgi2646 11 23067478 to 23068178 700 CpG island CpG island 2646
Tssr100606 11 23067992 to 23068005 13 + TSS region transcription start site region 100606
Gm12059 11 23067998 to 23075574 7576 + unclassified non-coding RNA gene predicted gene 12059
Tssr107125 11 23069222 to 23069228 6 - TSS region transcription start site region 107125
Gm39610 11 23091879 to 23103869 11990 - lncRNA gene predicted gene, 39610
Tssr100607 11 23152083 to 23152086 3 + TSS region transcription start site region 100607
Tssr100608 11 23152099 to 23152106 7 + TSS region transcription start site region 100608
Tssr100609 11 23152115 to 23152124 9 + TSS region transcription start site region 100609
Tssr100610 11 23152125 to 23152133 8 + TSS region transcription start site region 100610
Tssr100611 11 23152135 to 23152145 10 + TSS region transcription start site region 100611
1700061J23Rik 11 23152140 to 23166375 14235 + lincRNA gene RIKEN cDNA 1700061J23 gene
Gm24398 11 23172798 to 23172906 108 - snoRNA gene predicted gene, 24398
D11Mit340 11 23238865 to 23238998 133 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-340
Cpgi2647 11 23255094 to 23257674 2580 CpG island CpG island 2647
Xpo1 11 23255913 to 23297597 41684 + protein coding gene exportin 1
Tssr100612 11 23255920 to 23255976 56 + TSS region transcription start site region 100612
Tssr100613 11 23255980 to 23256000 20 + TSS region transcription start site region 100613
Tssr100614 11 23256001 to 23256105 104 + TSS region transcription start site region 100614
Tssr100615 11 23256566 to 23256580 14 + TSS region transcription start site region 100615
Tssr100616 11 23257456 to 23257464 8 + TSS region transcription start site region 100616
Tssr107126 11 23257478 to 23257487 9 - TSS region transcription start site region 107126
Tssr100617 11 23269613 to 23269620 7 + TSS region transcription start site region 100617
Tssr100618 11 23284303 to 23284320 17 + TSS region transcription start site region 100618
Tssr100619 11 23284655 to 23284669 14 + TSS region transcription start site region 100619
Gm3718 11 23304161 to 23306596 2435 - unclassified gene predicted gene 3718
Cpgi2648 11 23305700 to 23307519 1819 CpG island CpG island 2648
Tssr107127 11 23306302 to 23306316 14 - TSS region transcription start site region 107127
Tssr100620 11 23306428 to 23306472 44 + TSS region transcription start site region 100620
Tssr100621 11 23306499 to 23306602 103 + TSS region transcription start site region 100621
Tssr3446 11 23306690 to 23306718 28 + TSS region transcription start site region 3446
Tssr100622 11 23306736 to 23306747 11 + TSS region transcription start site region 100622
Tssr100623 11 23306884 to 23306906 22 + TSS region transcription start site region 100623
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Tssr100624 11 23306910 to 23306937 27 + TSS region transcription start site region 100624
Tssr100625 11 23401595 to 23401605 10 + TSS region transcription start site region 100625
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135
Selenok-ps1 11 23558058 to 23558842 784 - pseudogene selenoprotein K, pseudogene 1
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136
Cpgi2650 11 23632947 to 23633958 1011 CpG island CpG island 2650
Tssr107137 11 23633532 to 23633576 44 - TSS region transcription start site region 107137
Tssr107138 11 23633592 to 23633601 9 - TSS region transcription start site region 107138
Tssr107139 11 23633604 to 23633620 16 - TSS region transcription start site region 107139
Tssr107140 11 23633621 to 23633638 17 - TSS region transcription start site region 107140
Tssr107141 11 23633646 to 23633669 23 - TSS region transcription start site region 107141
Tssr3447 11 23633672 to 23633675 3 - TSS region transcription start site region 3447
Tssr107142 11 23646049 to 23646063 14 - TSS region transcription start site region 107142
Pex13 11 23646479 to 23665935 19456 - protein coding gene peroxisomal biogenesis factor 13
Cpgi2651 11 23665308 to 23666547 1239 CpG island CpG island 2651
Tssr100631 11 23665410 to 23665438 28 + TSS region transcription start site region 100631
Tssr100632 11 23665615 to 23665623 8 + TSS region transcription start site region 100632
Pus10 11 23665674 to 23732876 67202 + protein coding gene pseudouridylate synthase 10
Tssr107143 11 23665862 to 23665937 75 - TSS region transcription start site region 107143
Tssr100633 11 23666122 to 23666202 80 + TSS region transcription start site region 100633
Tssr100634 11 23666205 to 23666225 20 + TSS region transcription start site region 100634
Tssr100635 11 23666378 to 23666430 52 + TSS region transcription start site region 100635
Tssr100636 11 23666479 to 23666496 17 + TSS region transcription start site region 100636
5830495A06Rik 11 23697125 to 23698794 1669 unclassified gene RIKEN cDNA 5830495A06 gene
Tssr100637 11 23699578 to 23699582 4 + TSS region transcription start site region 100637
9430034F23Rik 11 23712731 to 23715080 2349 unclassified non-coding RNA gene RIKEN cDNA 9430034F23 gene
Tssr100638 11 23728822 to 23728828 6 + TSS region transcription start site region 100638
Tssr107144 11 23739461 to 23739473 12 - TSS region transcription start site region 107144
Tssr107145 11 23739752 to 23739764 12 - TSS region transcription start site region 107145
Tssr107146 11 23739821 to 23739838 17 - TSS region transcription start site region 107146
Tssr107147 11 23739869 to 23739877 8 - TSS region transcription start site region 107147
Tssr107148 11 23739930 to 23739952 22 - TSS region transcription start site region 107148
Tssr107149 11 23739955 to 23739985 30 - TSS region transcription start site region 107149
Tssr107150 11 23740021 to 23740030 9 - TSS region transcription start site region 107150
Tssr107151 11 23740181 to 23740184 3 - TSS region transcription start site region 107151
Tssr107152 11 23740832 to 23740842 10 - TSS region transcription start site region 107152
Tssr107153 11 23740911 to 23740922 11 - TSS region transcription start site region 107153
Tssr107154 11 23740953 to 23740984 31 - TSS region transcription start site region 107154
Tssr107155 11 23741118 to 23741130 12 - TSS region transcription start site region 107155
Tssr107156 11 23741382 to 23741398 16 - TSS region transcription start site region 107156
Rel 11 23741729 to 23770970 29241 - protein coding gene reticuloendotheliosis oncogene
Tssr107157 11 23741881 to 23741889 8 - TSS region transcription start site region 107157
Tssr107158 11 23745581 to 23745590 9 - TSS region transcription start site region 107158
Tssr107159 11 23746730 to 23746750 20 - TSS region transcription start site region 107159
Tssr107160 11 23746796 to 23746807 11 - TSS region transcription start site region 107160
Tssr107161 11 23748455 to 23748462 7 - TSS region transcription start site region 107161
Tssr100639 11 23754530 to 23754553 23 + TSS region transcription start site region 100639
Tssr107162 11 23758396 to 23758399 3 - TSS region transcription start site region 107162
Tssr107163 11 23762091 to 23762095 4 - TSS region transcription start site region 107163
Tssr100640 11 23769793 to 23769804 11 + TSS region transcription start site region 100640
Tssr100641 11 23769810 to 23769821 11 + TSS region transcription start site region 100641
Tssr100642 11 23770272 to 23770293 21 + TSS region transcription start site region 100642
Cpgi2652 11 23770488 to 23771728 1240 CpG island CpG island 2652
Tssr107164 11 23770736 to 23770748 12 - TSS region transcription start site region 107164
Tssr107165 11 23770750 to 23770789 39 - TSS region transcription start site region 107165
Tssr107166 11 23770799 to 23770808 9 - TSS region transcription start site region 107166
Tssr107167 11 23770827 to 23770846 19 - TSS region transcription start site region 107167
Tssr107168 11 23770864 to 23770877 13 - TSS region transcription start site region 107168
Tssr107169 11 23770920 to 23770925 5 - TSS region transcription start site region 107169
Tssr107170 11 23770933 to 23770942 9 - TSS region transcription start site region 107170
Tssr107171 11 23770953 to 23771028 75 - TSS region transcription start site region 107171
Tssr100643 11 23771145 to 23771164 19 + TSS region transcription start site region 100643
Tssr107172 11 23771199 to 23771210 11 - TSS region transcription start site region 107172
Tssr107173 11 23771230 to 23771264 34 - TSS region transcription start site region 107173
Tssr107174 11 23771279 to 23771293 14 - TSS region transcription start site region 107174
Tssr100644 11 23771584 to 23771598 14 + TSS region transcription start site region 100644
Tssr100645 11 23771618 to 23771627 9 + TSS region transcription start site region 100645
Gm23827 11 23776903 to 23777047 144 - snRNA gene predicted gene, 23827
Gm39612 11 23805437 to 23818936 13499 - lncRNA gene predicted gene, 39612
Tssr107175 11 23818861 to 23818886 25 - TSS region transcription start site region 107175
Tssr107176 11 23818887 to 23818907 20 - TSS region transcription start site region 107176
Tssr107177 11 23818952 to 23818974 22 - TSS region transcription start site region 107177
Tssr107178 11 23846514 to 23846531 17 - TSS region transcription start site region 107178
Papolg 11 23862646 to 23895253 32607 - protein coding gene poly(A) polymerase gamma
Cpgi2653 11 23894529 to 23895393 864 CpG island CpG island 2653
Gm12061 11 23894560 to 23895488 928 + antisense lncRNA gene predicted gene 12061
Tssr100646 11 23894759 to 23894775 16 + TSS region transcription start site region 100646
Tssr100647 11 23894779 to 23894791 12 + TSS region transcription start site region 100647
Tssr100648 11 23894796 to 23894803 7 + TSS region transcription start site region 100648
Tssr107179 11 23895175 to 23895189 14 - TSS region transcription start site region 107179
Tssr107180 11 23895208 to 23895280 72 - TSS region transcription start site region 107180
Gm12062 11 23928596 to 23928854 258 - pseudogene predicted gene 12062
Tssr3448 11 23961607 to 23961609 2 + TSS region transcription start site region 3448