Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:22480511-22990516

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12051 11 22483608 to 22491363 7755 + lincRNA gene predicted gene 12051
Gm46274 11 22498734 to 22511394 12660 - lncRNA gene predicted gene, 46274
Cpgi2638 11 22512200 to 22512956 756 CpG island CpG island 2638
Tmem17 11 22512283 to 22519231 6948 + protein coding gene transmembrane protein 17
Gm26829 11 22600335 to 22610879 10544 - lincRNA gene predicted gene, 26829
Tssr100582 11 22608021 to 22608031 10 + TSS region transcription start site region 100582
Tssr107099 11 22610331 to 22610344 13 - TSS region transcription start site region 107099
Tssr107100 11 22610350 to 22610371 21 - TSS region transcription start site region 107100
Tssr107101 11 22610381 to 22610396 15 - TSS region transcription start site region 107101
Tssr107102 11 22610404 to 22610416 12 - TSS region transcription start site region 107102
Tssr107103 11 22613461 to 22613470 9 - TSS region transcription start site region 107103
Gm12052 11 22617408 to 22618487 1079 + lincRNA gene predicted gene 12052
Cpgi2639 11 22617601 to 22617920 319 CpG island CpG island 2639
Tssr100583 11 22621325 to 22621342 17 + TSS region transcription start site region 100583
Gm12053 11 22626375 to 22626664 289 - pseudogene predicted gene 12053
Gm40816 11 22653845 to 22666524 12679 + lncRNA gene predicted gene, 40816
Gm12055 11 22729897 to 22732986 3089 - lincRNA gene predicted gene 12055
Gm12056 11 22734038 to 22737937 3899 + lincRNA gene predicted gene 12056
Tssr100584 11 22735511 to 22735516 5 + TSS region transcription start site region 100584
Gm12057 11 22758599 to 22760025 1426 - pseudogene predicted gene 12057
Cpgi2640 11 22762583 to 22762847 264 CpG island CpG island 2640
Tssr107104 11 22765582 to 22765604 22 - TSS region transcription start site region 107104
Tssr107105 11 22779307 to 22779312 5 - TSS region transcription start site region 107105
Tssr107106 11 22779315 to 22779320 5 - TSS region transcription start site region 107106
Gm12058 11 22786811 to 22787247 436 - pseudogene predicted gene 12058
Tssr107107 11 22800032 to 22800042 10 - TSS region transcription start site region 107107
Tssr107108 11 22814062 to 22814079 17 - TSS region transcription start site region 107108
B3gnt2 11 22834739 to 22860336 25597 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Gm28048 11 22834744 to 22982090 147346 - protein coding gene predicted gene, 28048
Tssr107109 11 22837168 to 22837179 11 - TSS region transcription start site region 107109
Gm20456 11 22839299 to 22842604 3305 + unclassified non-coding RNA gene predicted gene 20456
Gm23772 11 22846868 to 22846969 101 + snoRNA gene predicted gene, 23772
Tssr107110 11 22853111 to 22853122 11 - TSS region transcription start site region 107110
Tssr107111 11 22853195 to 22853203 8 - TSS region transcription start site region 107111
Tssr107112 11 22856527 to 22856529 2 - TSS region transcription start site region 107112
Cpgi2641 11 22858455 to 22860718 2263 CpG island CpG island 2641
Tssr107113 11 22858767 to 22858769 2 - TSS region transcription start site region 107113
9130230N09Rik 11 22858931 to 22861264 2333 + lncRNA gene RIKEN cDNA 9130230N09 gene
Tssr107114 11 22859633 to 22859647 14 - TSS region transcription start site region 107114
Tssr107115 11 22859662 to 22859680 18 - TSS region transcription start site region 107115
Tssr107116 11 22859684 to 22859713 29 - TSS region transcription start site region 107116
Tssr3443 11 22859721 to 22859732 11 - TSS region transcription start site region 3443
Tssr100585 11 22859861 to 22859873 12 + TSS region transcription start site region 100585
Tssr107117 11 22860432 to 22860456 24 - TSS region transcription start site region 107117
Tssr107118 11 22860467 to 22860494 27 - TSS region transcription start site region 107118
Tssr107119 11 22860588 to 22860610 22 - TSS region transcription start site region 107119
Tssr100586 11 22860835 to 22860838 3 + TSS region transcription start site region 100586
Gm24917 11 22868901 to 22869004 103 + snRNA gene predicted gene, 24917
Commd1 11 22899728 to 22983108 83380 - protein coding gene COMM domain containing 1
Tssr107120 11 22961083 to 22961087 4 - TSS region transcription start site region 107120
Cpgi2642 11 22971887 to 22973204 1317 CpG island CpG island 2642
Tssr100587 11 22971991 to 22972070 79 + TSS region transcription start site region 100587
Zrsr1 11 22972005 to 22976496 4491 + protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
Tssr100588 11 22972088 to 22972110 22 + TSS region transcription start site region 100588
Tssr100589 11 22972271 to 22972291 20 + TSS region transcription start site region 100589
Tssr107121 11 22972847 to 22972860 13 - TSS region transcription start site region 107121
Tssr107122 11 22972869 to 22972881 12 - TSS region transcription start site region 107122
Tssr107123 11 22972882 to 22972936 54 - TSS region transcription start site region 107123
Tssr100590 11 22972949 to 22973016 67 + TSS region transcription start site region 100590
Tssr100591 11 22973200 to 22973260 60 + TSS region transcription start site region 100591
Tssr100592 11 22973263 to 22973272 9 + TSS region transcription start site region 100592
Tssr100593 11 22973835 to 22973868 33 + TSS region transcription start site region 100593
Cpgi2643 11 22981813 to 22982603 790 CpG island CpG island 2643
Tssr107124 11 22982252 to 22982291 39 - TSS region transcription start site region 107124
Cpgi2644 11 22990351 to 22991144 793 CpG island CpG island 2644
Tssr3444 11 22990378 to 22990390 12 + TSS region transcription start site region 3444
Tssr100594 11 22990391 to 22990405 14 + TSS region transcription start site region 100594