Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:22387523-23627536

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpsa-ps3 11 22386292 to 22388196 1904 + pseudogene ribosomal protein SA, pseudogene 3
Gm39609 11 22418233 to 22443373 25140 - lncRNA gene predicted gene, 39609
Gm12050 11 22438821 to 22439775 954 - lincRNA gene predicted gene 12050
Gm12051 11 22483608 to 22491363 7755 + lincRNA gene predicted gene 12051
Gm46274 11 22498734 to 22511394 12660 - lncRNA gene predicted gene, 46274
Cpgi2638 11 22512200 to 22512956 756 CpG island CpG island 2638
Tmem17 11 22512283 to 22519231 6948 + protein coding gene transmembrane protein 17
Gm26829 11 22600335 to 22610879 10544 - lincRNA gene predicted gene, 26829
Tssr100582 11 22608021 to 22608031 10 + TSS region transcription start site region 100582
Tssr107099 11 22610331 to 22610344 13 - TSS region transcription start site region 107099
Tssr107100 11 22610350 to 22610371 21 - TSS region transcription start site region 107100
Tssr107101 11 22610381 to 22610396 15 - TSS region transcription start site region 107101
Tssr107102 11 22610404 to 22610416 12 - TSS region transcription start site region 107102
Tssr107103 11 22613461 to 22613470 9 - TSS region transcription start site region 107103
Gm12052 11 22617408 to 22618487 1079 + lincRNA gene predicted gene 12052
Cpgi2639 11 22617601 to 22617920 319 CpG island CpG island 2639
Tssr100583 11 22621325 to 22621342 17 + TSS region transcription start site region 100583
Gm12053 11 22626375 to 22626664 289 - pseudogene predicted gene 12053
Gm40816 11 22653845 to 22666524 12679 + lncRNA gene predicted gene, 40816
Gm12055 11 22729897 to 22732986 3089 - lincRNA gene predicted gene 12055
Gm12056 11 22734038 to 22737937 3899 + lincRNA gene predicted gene 12056
Tssr100584 11 22735511 to 22735516 5 + TSS region transcription start site region 100584
Gm12057 11 22758599 to 22760025 1426 - pseudogene predicted gene 12057
Cpgi2640 11 22762583 to 22762847 264 CpG island CpG island 2640
Tssr107104 11 22765582 to 22765604 22 - TSS region transcription start site region 107104
Tssr107105 11 22779307 to 22779312 5 - TSS region transcription start site region 107105
Tssr107106 11 22779315 to 22779320 5 - TSS region transcription start site region 107106
Gm12058 11 22786811 to 22787247 436 - pseudogene predicted gene 12058
Tssr107107 11 22800032 to 22800042 10 - TSS region transcription start site region 107107
Tssr107108 11 22814062 to 22814079 17 - TSS region transcription start site region 107108
B3gnt2 11 22834739 to 22860336 25597 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Gm28048 11 22834744 to 22982090 147346 - protein coding gene predicted gene, 28048
Tssr107109 11 22837168 to 22837179 11 - TSS region transcription start site region 107109
Gm20456 11 22839299 to 22842604 3305 + unclassified non-coding RNA gene predicted gene 20456
Gm23772 11 22846868 to 22846969 101 + snoRNA gene predicted gene, 23772
Tssr107110 11 22853111 to 22853122 11 - TSS region transcription start site region 107110
Tssr107111 11 22853195 to 22853203 8 - TSS region transcription start site region 107111
Tssr107112 11 22856527 to 22856529 2 - TSS region transcription start site region 107112
Cpgi2641 11 22858455 to 22860718 2263 CpG island CpG island 2641
Tssr107113 11 22858767 to 22858769 2 - TSS region transcription start site region 107113
9130230N09Rik 11 22858931 to 22861264 2333 + lncRNA gene RIKEN cDNA 9130230N09 gene
Tssr107114 11 22859633 to 22859647 14 - TSS region transcription start site region 107114
Tssr107115 11 22859662 to 22859680 18 - TSS region transcription start site region 107115
Tssr107116 11 22859684 to 22859713 29 - TSS region transcription start site region 107116
Tssr3443 11 22859721 to 22859732 11 - TSS region transcription start site region 3443
Tssr100585 11 22859861 to 22859873 12 + TSS region transcription start site region 100585
Tssr107117 11 22860432 to 22860456 24 - TSS region transcription start site region 107117
Tssr107118 11 22860467 to 22860494 27 - TSS region transcription start site region 107118
Tssr107119 11 22860588 to 22860610 22 - TSS region transcription start site region 107119
Tssr100586 11 22860835 to 22860838 3 + TSS region transcription start site region 100586
Gm24917 11 22868901 to 22869004 103 + snRNA gene predicted gene, 24917
Commd1 11 22899728 to 22983108 83380 - protein coding gene COMM domain containing 1
Tssr107120 11 22961083 to 22961087 4 - TSS region transcription start site region 107120
Cpgi2642 11 22971887 to 22973204 1317 CpG island CpG island 2642
Tssr100587 11 22971991 to 22972070 79 + TSS region transcription start site region 100587
Zrsr1 11 22972005 to 22976496 4491 + protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
Tssr100588 11 22972088 to 22972110 22 + TSS region transcription start site region 100588
Tssr100589 11 22972271 to 22972291 20 + TSS region transcription start site region 100589
Tssr107121 11 22972847 to 22972860 13 - TSS region transcription start site region 107121
Tssr107122 11 22972869 to 22972881 12 - TSS region transcription start site region 107122
Tssr107123 11 22972882 to 22972936 54 - TSS region transcription start site region 107123
Tssr100590 11 22972949 to 22973016 67 + TSS region transcription start site region 100590
Tssr100591 11 22973200 to 22973260 60 + TSS region transcription start site region 100591
Tssr100592 11 22973263 to 22973272 9 + TSS region transcription start site region 100592
Tssr100593 11 22973835 to 22973868 33 + TSS region transcription start site region 100593
Cpgi2643 11 22981813 to 22982603 790 CpG island CpG island 2643
Tssr107124 11 22982252 to 22982291 39 - TSS region transcription start site region 107124
Cpgi2644 11 22990351 to 22991144 793 CpG island CpG island 2644
Tssr3444 11 22990378 to 22990390 12 + TSS region transcription start site region 3444
Tssr100594 11 22990391 to 22990405 14 + TSS region transcription start site region 100594
Tssr100595 11 22990580 to 22990584 4 + TSS region transcription start site region 100595
Cct4 11 22990593 to 23003336 12743 + protein coding gene chaperonin containing Tcp1, subunit 4 (delta)
Tssr100596 11 22990617 to 22990654 37 + TSS region transcription start site region 100596
Tssr100597 11 23007523 to 23007536 13 + TSS region transcription start site region 100597
Fam161a 11 23007531 to 23030788 23257 + protein coding gene family with sequence similarity 161, member A
Cpgi2645 11 23007989 to 23008741 752 CpG island CpG island 2645
Tssr100598 11 23008337 to 23008391 54 + TSS region transcription start site region 100598
Tssr100599 11 23008420 to 23008500 80 + TSS region transcription start site region 100599
Tssr100600 11 23008521 to 23008532 11 + TSS region transcription start site region 100600
Tssr100601 11 23008542 to 23008553 11 + TSS region transcription start site region 100601
Tssr100602 11 23010976 to 23011001 25 + TSS region transcription start site region 100602
Tssr3445 11 23020281 to 23020288 7 + TSS region transcription start site region 3445
Tssr100603 11 23020346 to 23020355 9 + TSS region transcription start site region 100603
Tssr100604 11 23020464 to 23020486 22 + TSS region transcription start site region 100604
Tssr100605 11 23032837 to 23032849 12 + TSS region transcription start site region 100605
Gm23740 11 23063133 to 23063232 99 - rRNA gene predicted gene, 23740
Cpgi2646 11 23067478 to 23068178 700 CpG island CpG island 2646
Tssr100606 11 23067992 to 23068005 13 + TSS region transcription start site region 100606
Gm12059 11 23067998 to 23075574 7576 + unclassified non-coding RNA gene predicted gene 12059
Tssr107125 11 23069222 to 23069228 6 - TSS region transcription start site region 107125
Gm39610 11 23091879 to 23103869 11990 - lncRNA gene predicted gene, 39610
Tssr100607 11 23152083 to 23152086 3 + TSS region transcription start site region 100607
Tssr100608 11 23152099 to 23152106 7 + TSS region transcription start site region 100608
Tssr100609 11 23152115 to 23152124 9 + TSS region transcription start site region 100609
Tssr100610 11 23152125 to 23152133 8 + TSS region transcription start site region 100610
Tssr100611 11 23152135 to 23152145 10 + TSS region transcription start site region 100611
1700061J23Rik 11 23152140 to 23166375 14235 + lincRNA gene RIKEN cDNA 1700061J23 gene
Gm24398 11 23172798 to 23172906 108 - snoRNA gene predicted gene, 24398
D11Mit340 11 23238865 to 23238998 133 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-340
Cpgi2647 11 23255094 to 23257674 2580 CpG island CpG island 2647
Xpo1 11 23255913 to 23297597 41684 + protein coding gene exportin 1
Tssr100612 11 23255920 to 23255976 56 + TSS region transcription start site region 100612
Tssr100613 11 23255980 to 23256000 20 + TSS region transcription start site region 100613
Tssr100614 11 23256001 to 23256105 104 + TSS region transcription start site region 100614
Tssr100615 11 23256566 to 23256580 14 + TSS region transcription start site region 100615
Tssr100616 11 23257456 to 23257464 8 + TSS region transcription start site region 100616
Tssr107126 11 23257478 to 23257487 9 - TSS region transcription start site region 107126
Tssr100617 11 23269613 to 23269620 7 + TSS region transcription start site region 100617
Tssr100618 11 23284303 to 23284320 17 + TSS region transcription start site region 100618
Tssr100619 11 23284655 to 23284669 14 + TSS region transcription start site region 100619
Gm3718 11 23304161 to 23306596 2435 - unclassified gene predicted gene 3718
Cpgi2648 11 23305700 to 23307519 1819 CpG island CpG island 2648
Tssr107127 11 23306302 to 23306316 14 - TSS region transcription start site region 107127
Tssr100620 11 23306428 to 23306472 44 + TSS region transcription start site region 100620
Tssr100621 11 23306499 to 23306602 103 + TSS region transcription start site region 100621
Tssr3446 11 23306690 to 23306718 28 + TSS region transcription start site region 3446
Tssr100622 11 23306736 to 23306747 11 + TSS region transcription start site region 100622
Tssr100623 11 23306884 to 23306906 22 + TSS region transcription start site region 100623
Usp34 11 23306895 to 23490560 183665 + protein coding gene ubiquitin specific peptidase 34
Tssr100624 11 23306910 to 23306937 27 + TSS region transcription start site region 100624
Tssr100625 11 23401595 to 23401605 10 + TSS region transcription start site region 100625
Gm22753 11 23479561 to 23479667 106 - snRNA gene predicted gene, 22753
Ahsa2 11 23487882 to 23498030 10148 - protein coding gene AHA1, activator of heat shock protein ATPase 2
Cpgi2649 11 23497364 to 23498394 1030 CpG island CpG island 2649
Tssr100626 11 23497735 to 23497740 5 + TSS region transcription start site region 100626
Tssr100627 11 23497745 to 23497789 44 + TSS region transcription start site region 100627
Gm47279 11 23497749 to 23497839 90 - miRNA gene predicted gene, 47279
1700030C12Rik 11 23497753 to 23499661 1908 + lncRNA gene RIKEN cDNA 1700030C12 gene
Tssr100628 11 23497796 to 23497807 11 + TSS region transcription start site region 100628
Tssr100629 11 23497810 to 23497832 22 + TSS region transcription start site region 100629
Tssr100630 11 23497839 to 23497850 11 + TSS region transcription start site region 100630
Tssr107128 11 23497867 to 23497962 95 - TSS region transcription start site region 107128
Tssr107129 11 23498025 to 23498044 19 - TSS region transcription start site region 107129
Tssr107130 11 23498049 to 23498061 12 - TSS region transcription start site region 107130
1700093K21Rik 11 23516203 to 23521155 4952 - protein coding gene RIKEN cDNA 1700093K21 gene
Tssr107131 11 23519181 to 23519233 52 - TSS region transcription start site region 107131
Tssr107132 11 23519237 to 23519245 8 - TSS region transcription start site region 107132
Tssr107133 11 23519695 to 23519722 27 - TSS region transcription start site region 107133
Tssr107134 11 23520111 to 23520126 15 - TSS region transcription start site region 107134
Tssr107135 11 23520133 to 23520147 14 - TSS region transcription start site region 107135
Selenok-ps1 11 23558058 to 23558842 784 - pseudogene selenoprotein K, pseudogene 1
0610010F05Rik 11 23564961 to 23633639 68678 - protein coding gene RIKEN cDNA 0610010F05 gene
B230219J11Rik 11 23591036 to 23591870 834 unclassified gene RIKEN cDNA B230219J11 gene
Gm23114 11 23626745 to 23626861 116 - rRNA gene predicted gene, 23114
Tssr107136 11 23627233 to 23627236 3 - TSS region transcription start site region 107136