Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:22127283-22904231

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ehbp1 11 22005825 to 22287078 281253 - protein coding gene EH domain binding protein 1
Tssr107088 11 22138803 to 22138808 5 - TSS region transcription start site region 107088
A730093K11Rik 11 22141569 to 22142810 1241 unclassified gene RIKEN cDNA A730093K11 gene
D11Hjk26 11 22168619 to 22169055 436 DNA segment DNA segment, Chr 11, H. Jockusch 26
Tssr107089 11 22171343 to 22171368 25 - TSS region transcription start site region 107089
Tssr107090 11 22171406 to 22171426 20 - TSS region transcription start site region 107090
Tssr100580 11 22184515 to 22184518 3 + TSS region transcription start site region 100580
A830051L15Rik 11 22222150 to 22225833 3683 unclassified gene RIKEN cDNA A830051L15 gene
Tssr107091 11 22246684 to 22246690 6 - TSS region transcription start site region 107091
Cpgi2637 11 22286321 to 22287485 1164 CpG island CpG island 2637
Tssr107092 11 22286805 to 22286818 13 - TSS region transcription start site region 107092
Tssr107093 11 22286821 to 22286865 44 - TSS region transcription start site region 107093
Tssr107094 11 22286923 to 22286969 46 - TSS region transcription start site region 107094
Tssr107095 11 22286995 to 22287005 10 - TSS region transcription start site region 107095
Tssr107096 11 22287069 to 22287090 21 - TSS region transcription start site region 107096
Tssr100581 11 22287398 to 22287421 23 + TSS region transcription start site region 100581
Gm18932 11 22300005 to 22301061 1056 + pseudogene predicted gene, 18932
Tssr107097 11 22342266 to 22342273 7 - TSS region transcription start site region 107097
Tssr107098 11 22342285 to 22342296 11 - TSS region transcription start site region 107098
Rpsa-ps3 11 22386292 to 22388196 1904 + pseudogene ribosomal protein SA, pseudogene 3
Gm39609 11 22418233 to 22443373 25140 - lncRNA gene predicted gene, 39609
Gm12050 11 22438821 to 22439775 954 - lincRNA gene predicted gene 12050
Gm12051 11 22483608 to 22491363 7755 + lincRNA gene predicted gene 12051
Gm46274 11 22498734 to 22511394 12660 - lncRNA gene predicted gene, 46274
Cpgi2638 11 22512200 to 22512956 756 CpG island CpG island 2638
Tmem17 11 22512283 to 22519231 6948 + protein coding gene transmembrane protein 17
Gm26829 11 22600335 to 22610879 10544 - lincRNA gene predicted gene, 26829
Tssr100582 11 22608021 to 22608031 10 + TSS region transcription start site region 100582
Tssr107099 11 22610331 to 22610344 13 - TSS region transcription start site region 107099
Tssr107100 11 22610350 to 22610371 21 - TSS region transcription start site region 107100
Tssr107101 11 22610381 to 22610396 15 - TSS region transcription start site region 107101
Tssr107102 11 22610404 to 22610416 12 - TSS region transcription start site region 107102
Tssr107103 11 22613461 to 22613470 9 - TSS region transcription start site region 107103
Gm12052 11 22617408 to 22618487 1079 + lincRNA gene predicted gene 12052
Cpgi2639 11 22617601 to 22617920 319 CpG island CpG island 2639
Tssr100583 11 22621325 to 22621342 17 + TSS region transcription start site region 100583
Gm12053 11 22626375 to 22626664 289 - pseudogene predicted gene 12053
Gm40816 11 22653845 to 22666524 12679 + lncRNA gene predicted gene, 40816
Gm12055 11 22729897 to 22732986 3089 - lincRNA gene predicted gene 12055
Gm12056 11 22734038 to 22737937 3899 + lincRNA gene predicted gene 12056
Tssr100584 11 22735511 to 22735516 5 + TSS region transcription start site region 100584
Gm12057 11 22758599 to 22760025 1426 - pseudogene predicted gene 12057
Cpgi2640 11 22762583 to 22762847 264 CpG island CpG island 2640
Tssr107104 11 22765582 to 22765604 22 - TSS region transcription start site region 107104
Tssr107105 11 22779307 to 22779312 5 - TSS region transcription start site region 107105
Tssr107106 11 22779315 to 22779320 5 - TSS region transcription start site region 107106
Gm12058 11 22786811 to 22787247 436 - pseudogene predicted gene 12058
Tssr107107 11 22800032 to 22800042 10 - TSS region transcription start site region 107107
Tssr107108 11 22814062 to 22814079 17 - TSS region transcription start site region 107108
B3gnt2 11 22834739 to 22860336 25597 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Gm28048 11 22834744 to 22982090 147346 - protein coding gene predicted gene, 28048
Tssr107109 11 22837168 to 22837179 11 - TSS region transcription start site region 107109
Gm20456 11 22839299 to 22842604 3305 + unclassified non-coding RNA gene predicted gene 20456
Gm23772 11 22846868 to 22846969 101 + snoRNA gene predicted gene, 23772
Tssr107110 11 22853111 to 22853122 11 - TSS region transcription start site region 107110
Tssr107111 11 22853195 to 22853203 8 - TSS region transcription start site region 107111
Tssr107112 11 22856527 to 22856529 2 - TSS region transcription start site region 107112
Cpgi2641 11 22858455 to 22860718 2263 CpG island CpG island 2641
Tssr107113 11 22858767 to 22858769 2 - TSS region transcription start site region 107113
9130230N09Rik 11 22858931 to 22861264 2333 + lncRNA gene RIKEN cDNA 9130230N09 gene
Tssr107114 11 22859633 to 22859647 14 - TSS region transcription start site region 107114
Tssr107115 11 22859662 to 22859680 18 - TSS region transcription start site region 107115
Tssr107116 11 22859684 to 22859713 29 - TSS region transcription start site region 107116
Tssr3443 11 22859721 to 22859732 11 - TSS region transcription start site region 3443
Tssr100585 11 22859861 to 22859873 12 + TSS region transcription start site region 100585
Tssr107117 11 22860432 to 22860456 24 - TSS region transcription start site region 107117
Tssr107118 11 22860467 to 22860494 27 - TSS region transcription start site region 107118
Tssr107119 11 22860588 to 22860610 22 - TSS region transcription start site region 107119
Tssr100586 11 22860835 to 22860838 3 + TSS region transcription start site region 100586
Gm24917 11 22868901 to 22869004 103 + snRNA gene predicted gene, 24917
Commd1 11 22899728 to 22983108 83380 - protein coding gene COMM domain containing 1