Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:21992150-22455833

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2632 11 21992730 to 21994163 1433 CpG island CpG island 2632
Otx1 11 21994764 to 22002897 8133 - protein coding gene orthodenticle homeobox 1
Cpgi2633 11 21996286 to 21997352 1066 CpG island CpG island 2633
Tssr107081 11 21997042 to 21997090 48 - TSS region transcription start site region 107081
Cpgi2634 11 21998335 to 21998663 328 CpG island CpG island 2634
Gm32517 11 21998501 to 22002643 4142 + lncRNA gene predicted gene, 32517
Cpgi2635 11 22000243 to 22003108 2865 CpG island CpG island 2635
Tssr107082 11 22001584 to 22001601 17 - TSS region transcription start site region 107082
Tssr107083 11 22001605 to 22001631 26 - TSS region transcription start site region 107083
Tssr100579 11 22001843 to 22001846 3 + TSS region transcription start site region 100579
Cpgi2636 11 22003492 to 22004058 566 CpG island CpG island 2636
Ehbp1 11 22005825 to 22287078 281253 - protein coding gene EH domain binding protein 1
Tssr107084 11 22007185 to 22007206 21 - TSS region transcription start site region 107084
Tssr107085 11 22007432 to 22007452 20 - TSS region transcription start site region 107085
Tssr107086 11 22048026 to 22048031 5 - TSS region transcription start site region 107086
Tssr107087 11 22058468 to 22058471 3 - TSS region transcription start site region 107087
Tssr107088 11 22138803 to 22138808 5 - TSS region transcription start site region 107088
A730093K11Rik 11 22141569 to 22142810 1241 unclassified gene RIKEN cDNA A730093K11 gene
D11Hjk26 11 22168619 to 22169055 436 DNA segment DNA segment, Chr 11, H. Jockusch 26
Tssr107089 11 22171343 to 22171368 25 - TSS region transcription start site region 107089
Tssr107090 11 22171406 to 22171426 20 - TSS region transcription start site region 107090
Tssr100580 11 22184515 to 22184518 3 + TSS region transcription start site region 100580
A830051L15Rik 11 22222150 to 22225833 3683 unclassified gene RIKEN cDNA A830051L15 gene
Tssr107091 11 22246684 to 22246690 6 - TSS region transcription start site region 107091
Cpgi2637 11 22286321 to 22287485 1164 CpG island CpG island 2637
Tssr107092 11 22286805 to 22286818 13 - TSS region transcription start site region 107092
Tssr107093 11 22286821 to 22286865 44 - TSS region transcription start site region 107093
Tssr107094 11 22286923 to 22286969 46 - TSS region transcription start site region 107094
Tssr107095 11 22286995 to 22287005 10 - TSS region transcription start site region 107095
Tssr107096 11 22287069 to 22287090 21 - TSS region transcription start site region 107096
Tssr100581 11 22287398 to 22287421 23 + TSS region transcription start site region 100581
Gm18932 11 22300005 to 22301061 1056 + pseudogene predicted gene, 18932
Tssr107097 11 22342266 to 22342273 7 - TSS region transcription start site region 107097
Tssr107098 11 22342285 to 22342296 11 - TSS region transcription start site region 107098
Rpsa-ps3 11 22386292 to 22388196 1904 + pseudogene ribosomal protein SA, pseudogene 3
Gm39609 11 22418233 to 22443373 25140 - lncRNA gene predicted gene, 39609
Gm12050 11 22438821 to 22439775 954 - lincRNA gene predicted gene 12050