Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:21553803-22723808

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdh1 11 21556692 to 21571934 15242 - protein coding gene malate dehydrogenase 1, NAD (soluble)
Tssr107071 11 21557280 to 21557307 27 - TSS region transcription start site region 107071
Gm22990 11 21564561 to 21564649 88 - miRNA gene predicted gene, 22990
Tssr107072 11 21565888 to 21565907 19 - TSS region transcription start site region 107072
Tssr107073 11 21569097 to 21569100 3 - TSS region transcription start site region 107073
Tssr107074 11 21569968 to 21569971 3 - TSS region transcription start site region 107074
Cpgi2631 11 21571584 to 21572500 916 CpG island CpG island 2631
Tssr107075 11 21571774 to 21571780 6 - TSS region transcription start site region 107075
Tssr107076 11 21571786 to 21571797 11 - TSS region transcription start site region 107076
Tssr107077 11 21571798 to 21571827 29 - TSS region transcription start site region 107077
Tssr107078 11 21572037 to 21572049 12 - TSS region transcription start site region 107078
Tssr107079 11 21572193 to 21572211 18 - TSS region transcription start site region 107079
Tssr100574 11 21572221 to 21572232 11 + TSS region transcription start site region 100574
Wdpcp 11 21572235 to 21898989 326754 + protein coding gene WD repeat containing planar cell polarity effector
Tssr100575 11 21572273 to 21572334 61 + TSS region transcription start site region 100575
Tssr100576 11 21601141 to 21601144 3 + TSS region transcription start site region 100576
Pgam1-ps1 11 21683308 to 21684056 748 - pseudogene phosphoglycerate mutase 1, pseudogene 1
Tssr107080 11 21684073 to 21684105 32 - TSS region transcription start site region 107080
D11Hjk27 11 21715439 to 21716919 1480 DNA segment DNA segment, Chr 11, H. Jockusch 27
D11Hjk29 11 21825079 to 21825382 303 DNA segment DNA segment, Chr 11, H. Jockusch 29
D11Mit371 11 21844983 to 21845270 287 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-371
Dfs2 11 21857364 to 95990405 74133041 QTL dental fluorosis suseptibility 2
Gm12047 11 21877007 to 21877950 943 - pseudogene predicted gene 12047
D11Hjk28 11 21896156 to 21897679 1523 DNA segment DNA segment, Chr 11, H. Jockusch 28
Tssr100577 11 21953103 to 21953112 9 + TSS region transcription start site region 100577
Rpl15-ps1 11 21953141 to 21953704 563 + pseudogene ribosomal protein L15, pseudogene 1
Tssr100578 11 21976569 to 21976572 3 + TSS region transcription start site region 100578
Gm7906 11 21976570 to 21977463 893 + pseudogene predicted gene 7906
Cpgi2632 11 21992730 to 21994163 1433 CpG island CpG island 2632
Otx1 11 21994764 to 22002897 8133 - protein coding gene orthodenticle homeobox 1
Cpgi2633 11 21996286 to 21997352 1066 CpG island CpG island 2633
Tssr107081 11 21997042 to 21997090 48 - TSS region transcription start site region 107081
Cpgi2634 11 21998335 to 21998663 328 CpG island CpG island 2634
Gm32517 11 21998501 to 22002643 4142 + lncRNA gene predicted gene, 32517
Cpgi2635 11 22000243 to 22003108 2865 CpG island CpG island 2635
Tssr107082 11 22001584 to 22001601 17 - TSS region transcription start site region 107082
Tssr107083 11 22001605 to 22001631 26 - TSS region transcription start site region 107083
Tssr100579 11 22001843 to 22001846 3 + TSS region transcription start site region 100579
Cpgi2636 11 22003492 to 22004058 566 CpG island CpG island 2636
Ehbp1 11 22005825 to 22287078 281253 - protein coding gene EH domain binding protein 1
Tssr107084 11 22007185 to 22007206 21 - TSS region transcription start site region 107084
Tssr107085 11 22007432 to 22007452 20 - TSS region transcription start site region 107085
Tssr107086 11 22048026 to 22048031 5 - TSS region transcription start site region 107086
Tssr107087 11 22058468 to 22058471 3 - TSS region transcription start site region 107087
Tssr107088 11 22138803 to 22138808 5 - TSS region transcription start site region 107088
A730093K11Rik 11 22141569 to 22142810 1241 unclassified gene RIKEN cDNA A730093K11 gene
D11Hjk26 11 22168619 to 22169055 436 DNA segment DNA segment, Chr 11, H. Jockusch 26
Tssr107089 11 22171343 to 22171368 25 - TSS region transcription start site region 107089
Tssr107090 11 22171406 to 22171426 20 - TSS region transcription start site region 107090
Tssr100580 11 22184515 to 22184518 3 + TSS region transcription start site region 100580
A830051L15Rik 11 22222150 to 22225833 3683 unclassified gene RIKEN cDNA A830051L15 gene
Tssr107091 11 22246684 to 22246690 6 - TSS region transcription start site region 107091
Cpgi2637 11 22286321 to 22287485 1164 CpG island CpG island 2637
Tssr107092 11 22286805 to 22286818 13 - TSS region transcription start site region 107092
Tssr107093 11 22286821 to 22286865 44 - TSS region transcription start site region 107093
Tssr107094 11 22286923 to 22286969 46 - TSS region transcription start site region 107094
Tssr107095 11 22286995 to 22287005 10 - TSS region transcription start site region 107095
Tssr107096 11 22287069 to 22287090 21 - TSS region transcription start site region 107096
Tssr100581 11 22287398 to 22287421 23 + TSS region transcription start site region 100581
Gm18932 11 22300005 to 22301061 1056 + pseudogene predicted gene, 18932
Tssr107097 11 22342266 to 22342273 7 - TSS region transcription start site region 107097
Tssr107098 11 22342285 to 22342296 11 - TSS region transcription start site region 107098
Rpsa-ps3 11 22386292 to 22388196 1904 + pseudogene ribosomal protein SA, pseudogene 3
Gm39609 11 22418233 to 22443373 25140 - lncRNA gene predicted gene, 39609
Gm12050 11 22438821 to 22439775 954 - lincRNA gene predicted gene 12050
Gm12051 11 22483608 to 22491363 7755 + lincRNA gene predicted gene 12051
Gm46274 11 22498734 to 22511394 12660 - lncRNA gene predicted gene, 46274
Cpgi2638 11 22512200 to 22512956 756 CpG island CpG island 2638
Tmem17 11 22512283 to 22519231 6948 + protein coding gene transmembrane protein 17
Gm26829 11 22600335 to 22610879 10544 - lincRNA gene predicted gene, 26829
Tssr100582 11 22608021 to 22608031 10 + TSS region transcription start site region 100582
Tssr107099 11 22610331 to 22610344 13 - TSS region transcription start site region 107099
Tssr107100 11 22610350 to 22610371 21 - TSS region transcription start site region 107100
Tssr107101 11 22610381 to 22610396 15 - TSS region transcription start site region 107101
Tssr107102 11 22610404 to 22610416 12 - TSS region transcription start site region 107102
Tssr107103 11 22613461 to 22613470 9 - TSS region transcription start site region 107103
Gm12052 11 22617408 to 22618487 1079 + lincRNA gene predicted gene 12052
Cpgi2639 11 22617601 to 22617920 319 CpG island CpG island 2639
Tssr100583 11 22621325 to 22621342 17 + TSS region transcription start site region 100583
Gm12053 11 22626375 to 22626664 289 - pseudogene predicted gene 12053
Gm40816 11 22653845 to 22666524 12679 + lncRNA gene predicted gene, 40816