Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:21522285-23162296

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdh1 11 21556692 to 21571934 15242 - protein coding gene malate dehydrogenase 1, NAD (soluble)
Tssr107071 11 21557280 to 21557307 27 - TSS region transcription start site region 107071
Gm22990 11 21564561 to 21564649 88 - miRNA gene predicted gene, 22990
Tssr107072 11 21565888 to 21565907 19 - TSS region transcription start site region 107072
Tssr107073 11 21569097 to 21569100 3 - TSS region transcription start site region 107073
Tssr107074 11 21569968 to 21569971 3 - TSS region transcription start site region 107074
Cpgi2631 11 21571584 to 21572500 916 CpG island CpG island 2631
Tssr107075 11 21571774 to 21571780 6 - TSS region transcription start site region 107075
Tssr107076 11 21571786 to 21571797 11 - TSS region transcription start site region 107076
Tssr107077 11 21571798 to 21571827 29 - TSS region transcription start site region 107077
Tssr107078 11 21572037 to 21572049 12 - TSS region transcription start site region 107078
Tssr107079 11 21572193 to 21572211 18 - TSS region transcription start site region 107079
Tssr100574 11 21572221 to 21572232 11 + TSS region transcription start site region 100574
Wdpcp 11 21572235 to 21898989 326754 + protein coding gene WD repeat containing planar cell polarity effector
Tssr100575 11 21572273 to 21572334 61 + TSS region transcription start site region 100575
Tssr100576 11 21601141 to 21601144 3 + TSS region transcription start site region 100576
Pgam1-ps1 11 21683308 to 21684056 748 - pseudogene phosphoglycerate mutase 1, pseudogene 1
Tssr107080 11 21684073 to 21684105 32 - TSS region transcription start site region 107080
D11Hjk27 11 21715439 to 21716919 1480 DNA segment DNA segment, Chr 11, H. Jockusch 27
D11Hjk29 11 21825079 to 21825382 303 DNA segment DNA segment, Chr 11, H. Jockusch 29
D11Mit371 11 21844983 to 21845270 287 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-371
Dfs2 11 21857364 to 95990405 74133041 QTL dental fluorosis suseptibility 2
Gm12047 11 21877007 to 21877950 943 - pseudogene predicted gene 12047
D11Hjk28 11 21896156 to 21897679 1523 DNA segment DNA segment, Chr 11, H. Jockusch 28
Tssr100577 11 21953103 to 21953112 9 + TSS region transcription start site region 100577
Rpl15-ps1 11 21953141 to 21953704 563 + pseudogene ribosomal protein L15, pseudogene 1
Tssr100578 11 21976569 to 21976572 3 + TSS region transcription start site region 100578
Gm7906 11 21976570 to 21977463 893 + pseudogene predicted gene 7906
Cpgi2632 11 21992730 to 21994163 1433 CpG island CpG island 2632
Otx1 11 21994764 to 22002897 8133 - protein coding gene orthodenticle homeobox 1
Cpgi2633 11 21996286 to 21997352 1066 CpG island CpG island 2633
Tssr107081 11 21997042 to 21997090 48 - TSS region transcription start site region 107081
Cpgi2634 11 21998335 to 21998663 328 CpG island CpG island 2634
Gm32517 11 21998501 to 22002643 4142 + lncRNA gene predicted gene, 32517
Cpgi2635 11 22000243 to 22003108 2865 CpG island CpG island 2635
Tssr107082 11 22001584 to 22001601 17 - TSS region transcription start site region 107082
Tssr107083 11 22001605 to 22001631 26 - TSS region transcription start site region 107083
Tssr100579 11 22001843 to 22001846 3 + TSS region transcription start site region 100579
Cpgi2636 11 22003492 to 22004058 566 CpG island CpG island 2636
Ehbp1 11 22005825 to 22287078 281253 - protein coding gene EH domain binding protein 1
Tssr107084 11 22007185 to 22007206 21 - TSS region transcription start site region 107084
Tssr107085 11 22007432 to 22007452 20 - TSS region transcription start site region 107085
Tssr107086 11 22048026 to 22048031 5 - TSS region transcription start site region 107086
Tssr107087 11 22058468 to 22058471 3 - TSS region transcription start site region 107087
Tssr107088 11 22138803 to 22138808 5 - TSS region transcription start site region 107088
A730093K11Rik 11 22141569 to 22142810 1241 unclassified gene RIKEN cDNA A730093K11 gene
D11Hjk26 11 22168619 to 22169055 436 DNA segment DNA segment, Chr 11, H. Jockusch 26
Tssr107089 11 22171343 to 22171368 25 - TSS region transcription start site region 107089
Tssr107090 11 22171406 to 22171426 20 - TSS region transcription start site region 107090
Tssr100580 11 22184515 to 22184518 3 + TSS region transcription start site region 100580
A830051L15Rik 11 22222150 to 22225833 3683 unclassified gene RIKEN cDNA A830051L15 gene
Tssr107091 11 22246684 to 22246690 6 - TSS region transcription start site region 107091
Cpgi2637 11 22286321 to 22287485 1164 CpG island CpG island 2637
Tssr107092 11 22286805 to 22286818 13 - TSS region transcription start site region 107092
Tssr107093 11 22286821 to 22286865 44 - TSS region transcription start site region 107093
Tssr107094 11 22286923 to 22286969 46 - TSS region transcription start site region 107094
Tssr107095 11 22286995 to 22287005 10 - TSS region transcription start site region 107095
Tssr107096 11 22287069 to 22287090 21 - TSS region transcription start site region 107096
Tssr100581 11 22287398 to 22287421 23 + TSS region transcription start site region 100581
Gm18932 11 22300005 to 22301061 1056 + pseudogene predicted gene, 18932
Tssr107097 11 22342266 to 22342273 7 - TSS region transcription start site region 107097
Tssr107098 11 22342285 to 22342296 11 - TSS region transcription start site region 107098
Rpsa-ps3 11 22386292 to 22388196 1904 + pseudogene ribosomal protein SA, pseudogene 3
Gm39609 11 22418233 to 22443373 25140 - lncRNA gene predicted gene, 39609
Gm12050 11 22438821 to 22439775 954 - lincRNA gene predicted gene 12050
Gm12051 11 22483608 to 22491363 7755 + lincRNA gene predicted gene 12051
Gm46274 11 22498734 to 22511394 12660 - lncRNA gene predicted gene, 46274
Cpgi2638 11 22512200 to 22512956 756 CpG island CpG island 2638
Tmem17 11 22512283 to 22519231 6948 + protein coding gene transmembrane protein 17
Gm26829 11 22600335 to 22610879 10544 - lincRNA gene predicted gene, 26829
Tssr100582 11 22608021 to 22608031 10 + TSS region transcription start site region 100582
Tssr107099 11 22610331 to 22610344 13 - TSS region transcription start site region 107099
Tssr107100 11 22610350 to 22610371 21 - TSS region transcription start site region 107100
Tssr107101 11 22610381 to 22610396 15 - TSS region transcription start site region 107101
Tssr107102 11 22610404 to 22610416 12 - TSS region transcription start site region 107102
Tssr107103 11 22613461 to 22613470 9 - TSS region transcription start site region 107103
Gm12052 11 22617408 to 22618487 1079 + lincRNA gene predicted gene 12052
Cpgi2639 11 22617601 to 22617920 319 CpG island CpG island 2639
Tssr100583 11 22621325 to 22621342 17 + TSS region transcription start site region 100583
Gm12053 11 22626375 to 22626664 289 - pseudogene predicted gene 12053
Gm40816 11 22653845 to 22666524 12679 + lncRNA gene predicted gene, 40816
Gm12055 11 22729897 to 22732986 3089 - lincRNA gene predicted gene 12055
Gm12056 11 22734038 to 22737937 3899 + lincRNA gene predicted gene 12056
Tssr100584 11 22735511 to 22735516 5 + TSS region transcription start site region 100584
Gm12057 11 22758599 to 22760025 1426 - pseudogene predicted gene 12057
Cpgi2640 11 22762583 to 22762847 264 CpG island CpG island 2640
Tssr107104 11 22765582 to 22765604 22 - TSS region transcription start site region 107104
Tssr107105 11 22779307 to 22779312 5 - TSS region transcription start site region 107105
Tssr107106 11 22779315 to 22779320 5 - TSS region transcription start site region 107106
Gm12058 11 22786811 to 22787247 436 - pseudogene predicted gene 12058
Tssr107107 11 22800032 to 22800042 10 - TSS region transcription start site region 107107
Tssr107108 11 22814062 to 22814079 17 - TSS region transcription start site region 107108
B3gnt2 11 22834739 to 22860336 25597 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Gm28048 11 22834744 to 22982090 147346 - protein coding gene predicted gene, 28048
Tssr107109 11 22837168 to 22837179 11 - TSS region transcription start site region 107109
Gm20456 11 22839299 to 22842604 3305 + unclassified non-coding RNA gene predicted gene 20456
Gm23772 11 22846868 to 22846969 101 + snoRNA gene predicted gene, 23772
Tssr107110 11 22853111 to 22853122 11 - TSS region transcription start site region 107110
Tssr107111 11 22853195 to 22853203 8 - TSS region transcription start site region 107111
Tssr107112 11 22856527 to 22856529 2 - TSS region transcription start site region 107112
Cpgi2641 11 22858455 to 22860718 2263 CpG island CpG island 2641
Tssr107113 11 22858767 to 22858769 2 - TSS region transcription start site region 107113
9130230N09Rik 11 22858931 to 22861264 2333 + lncRNA gene RIKEN cDNA 9130230N09 gene
Tssr107114 11 22859633 to 22859647 14 - TSS region transcription start site region 107114
Tssr107115 11 22859662 to 22859680 18 - TSS region transcription start site region 107115
Tssr107116 11 22859684 to 22859713 29 - TSS region transcription start site region 107116
Tssr3443 11 22859721 to 22859732 11 - TSS region transcription start site region 3443
Tssr100585 11 22859861 to 22859873 12 + TSS region transcription start site region 100585
Tssr107117 11 22860432 to 22860456 24 - TSS region transcription start site region 107117
Tssr107118 11 22860467 to 22860494 27 - TSS region transcription start site region 107118
Tssr107119 11 22860588 to 22860610 22 - TSS region transcription start site region 107119
Tssr100586 11 22860835 to 22860838 3 + TSS region transcription start site region 100586
Gm24917 11 22868901 to 22869004 103 + snRNA gene predicted gene, 24917
Commd1 11 22899728 to 22983108 83380 - protein coding gene COMM domain containing 1
Tssr107120 11 22961083 to 22961087 4 - TSS region transcription start site region 107120
Cpgi2642 11 22971887 to 22973204 1317 CpG island CpG island 2642
Tssr100587 11 22971991 to 22972070 79 + TSS region transcription start site region 100587
Zrsr1 11 22972005 to 22976496 4491 + protein coding gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
Tssr100588 11 22972088 to 22972110 22 + TSS region transcription start site region 100588
Tssr100589 11 22972271 to 22972291 20 + TSS region transcription start site region 100589
Tssr107121 11 22972847 to 22972860 13 - TSS region transcription start site region 107121
Tssr107122 11 22972869 to 22972881 12 - TSS region transcription start site region 107122
Tssr107123 11 22972882 to 22972936 54 - TSS region transcription start site region 107123
Tssr100590 11 22972949 to 22973016 67 + TSS region transcription start site region 100590
Tssr100591 11 22973200 to 22973260 60 + TSS region transcription start site region 100591
Tssr100592 11 22973263 to 22973272 9 + TSS region transcription start site region 100592
Tssr100593 11 22973835 to 22973868 33 + TSS region transcription start site region 100593
Cpgi2643 11 22981813 to 22982603 790 CpG island CpG island 2643
Tssr107124 11 22982252 to 22982291 39 - TSS region transcription start site region 107124
Cpgi2644 11 22990351 to 22991144 793 CpG island CpG island 2644
Tssr3444 11 22990378 to 22990390 12 + TSS region transcription start site region 3444
Tssr100594 11 22990391 to 22990405 14 + TSS region transcription start site region 100594
Tssr100595 11 22990580 to 22990584 4 + TSS region transcription start site region 100595
Cct4 11 22990593 to 23003336 12743 + protein coding gene chaperonin containing Tcp1, subunit 4 (delta)
Tssr100596 11 22990617 to 22990654 37 + TSS region transcription start site region 100596
Tssr100597 11 23007523 to 23007536 13 + TSS region transcription start site region 100597
Fam161a 11 23007531 to 23030788 23257 + protein coding gene family with sequence similarity 161, member A
Cpgi2645 11 23007989 to 23008741 752 CpG island CpG island 2645
Tssr100598 11 23008337 to 23008391 54 + TSS region transcription start site region 100598
Tssr100599 11 23008420 to 23008500 80 + TSS region transcription start site region 100599
Tssr100600 11 23008521 to 23008532 11 + TSS region transcription start site region 100600
Tssr100601 11 23008542 to 23008553 11 + TSS region transcription start site region 100601
Tssr100602 11 23010976 to 23011001 25 + TSS region transcription start site region 100602
Tssr3445 11 23020281 to 23020288 7 + TSS region transcription start site region 3445
Tssr100603 11 23020346 to 23020355 9 + TSS region transcription start site region 100603
Tssr100604 11 23020464 to 23020486 22 + TSS region transcription start site region 100604
Tssr100605 11 23032837 to 23032849 12 + TSS region transcription start site region 100605
Gm23740 11 23063133 to 23063232 99 - rRNA gene predicted gene, 23740
Cpgi2646 11 23067478 to 23068178 700 CpG island CpG island 2646
Tssr100606 11 23067992 to 23068005 13 + TSS region transcription start site region 100606
Gm12059 11 23067998 to 23075574 7576 + unclassified non-coding RNA gene predicted gene 12059
Tssr107125 11 23069222 to 23069228 6 - TSS region transcription start site region 107125
Gm39610 11 23091879 to 23103869 11990 - lncRNA gene predicted gene, 39610
Tssr100607 11 23152083 to 23152086 3 + TSS region transcription start site region 100607
Tssr100608 11 23152099 to 23152106 7 + TSS region transcription start site region 100608
Tssr100609 11 23152115 to 23152124 9 + TSS region transcription start site region 100609
Tssr100610 11 23152125 to 23152133 8 + TSS region transcription start site region 100610
Tssr100611 11 23152135 to 23152145 10 + TSS region transcription start site region 100611
1700061J23Rik 11 23152140 to 23166375 14235 + lincRNA gene RIKEN cDNA 1700061J23 gene