Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:20836324-21405327

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12038 11 20847476 to 20847682 206 - pseudogene predicted gene 12038
Gm22807 11 20847753 to 20847881 128 - snoRNA gene predicted gene, 22807
Tssr107052 11 20881487 to 20881508 21 - TSS region transcription start site region 107052
Gm39608 11 20894468 to 20898879 4411 - lncRNA gene predicted gene, 39608
Tssr107053 11 20898685 to 20898693 8 - TSS region transcription start site region 107053
Tssr107054 11 20898726 to 20898743 17 - TSS region transcription start site region 107054
D11Hjk10 11 20908915 to 20909024 109 DNA segment DNA segment, Chr 11, H. Jockusch 10
Gm46273 11 20911601 to 20917578 5977 - lncRNA gene predicted gene, 46273
Tssr100526 11 20917294 to 20917310 16 + TSS region transcription start site region 100526
Gm32293 11 20917339 to 20966444 49105 + lncRNA gene predicted gene, 32293
Gm23681 11 20937576 to 20937701 125 - miRNA gene predicted gene, 23681
D11Hjk30 11 20957785 to 20958308 523 DNA segment DNA segment, Chr 11, H. Jockusch 30
Tssr107055 11 21046282 to 21046329 47 - TSS region transcription start site region 107055
Tssr100527 11 21048157 to 21048171 14 + TSS region transcription start site region 100527
Tssr100528 11 21048250 to 21048259 9 + TSS region transcription start site region 100528
Tssr100529 11 21048900 to 21048937 37 + TSS region transcription start site region 100529
Gm40824 11 21050355 to 21110192 59837 + protein coding gene predicted gene, 40824
Cpgi2628 11 21090941 to 21092199 1258 CpG island CpG island 2628
Tssr100530 11 21091135 to 21091156 21 + TSS region transcription start site region 100530
Tssr100531 11 21091297 to 21091339 42 + TSS region transcription start site region 100531
Peli1 11 21091324 to 21150327 59003 + protein coding gene pellino 1
Tssr100532 11 21091371 to 21091401 30 + TSS region transcription start site region 100532
Tssr107056 11 21091964 to 21091973 9 - TSS region transcription start site region 107056
Tssr100533 11 21092549 to 21092560 11 + TSS region transcription start site region 100533
Tssr100534 11 21092940 to 21092971 31 + TSS region transcription start site region 100534
Tssr100535 11 21093030 to 21093033 3 + TSS region transcription start site region 100535
Tssr100536 11 21095731 to 21095748 17 + TSS region transcription start site region 100536
Tssr100537 11 21095814 to 21095822 8 + TSS region transcription start site region 100537
Tssr100538 11 21097358 to 21097377 19 + TSS region transcription start site region 100538
2610024D14Rik 11 21099534 to 21099827 293 + pseudogene RIKEN cDNA 2610024D14 gene
Tssr100539 11 21101024 to 21101058 34 + TSS region transcription start site region 100539
Tssr100540 11 21102503 to 21102532 29 + TSS region transcription start site region 100540
Tssr100541 11 21105926 to 21105937 11 + TSS region transcription start site region 100541
Tssr100542 11 21105960 to 21105979 19 + TSS region transcription start site region 100542
Tssr100543 11 21105997 to 21106020 23 + TSS region transcription start site region 100543
Tssr100544 11 21115316 to 21115354 38 + TSS region transcription start site region 100544
Tssr100545 11 21116853 to 21116865 12 + TSS region transcription start site region 100545
Tssr100546 11 21116868 to 21116879 11 + TSS region transcription start site region 100546
Tssr100547 11 21116902 to 21116914 12 + TSS region transcription start site region 100547
Tssr100548 11 21118178 to 21118220 42 + TSS region transcription start site region 100548
Tssr100549 11 21136666 to 21136669 3 + TSS region transcription start site region 100549
Tssr100550 11 21140643 to 21140672 29 + TSS region transcription start site region 100550
Tssr100551 11 21148820 to 21148834 14 + TSS region transcription start site region 100551
Tssr100552 11 21149059 to 21149083 24 + TSS region transcription start site region 100552
Tssr100553 11 21149089 to 21149102 13 + TSS region transcription start site region 100553
Tssr100554 11 21149202 to 21149213 11 + TSS region transcription start site region 100554
Tssr100555 11 21149713 to 21149724 11 + TSS region transcription start site region 100555
Tssr107057 11 21174602 to 21174626 24 - TSS region transcription start site region 107057
Gm22600 11 21197708 to 21197976 268 - unclassified non-coding RNA gene predicted gene, 22600
Gm12040 11 21206410 to 21206946 536 - pseudogene predicted gene 12040
Tssr107058 11 21207035 to 21207049 14 - TSS region transcription start site region 107058
Tssr100556 11 21219534 to 21219575 41 + TSS region transcription start site region 100556
Tssr100557 11 21220981 to 21221015 34 + TSS region transcription start site region 100557
Gm12041 11 21227655 to 21228256 601 + pseudogene predicted gene 12041
Tssr107059 11 21238173 to 21238176 3 - TSS region transcription start site region 107059
Cpgi2629 11 21238418 to 21239680 1262 CpG island CpG island 2629
Tssr100558 11 21238515 to 21238536 21 + TSS region transcription start site region 100558
Tssr100559 11 21238564 to 21238579 15 + TSS region transcription start site region 100559
Tssr100560 11 21238689 to 21238745 56 + TSS region transcription start site region 100560
Tssr100561 11 21238875 to 21238966 91 + TSS region transcription start site region 100561
Tssr100562 11 21239103 to 21239147 44 + TSS region transcription start site region 100562
Tssr100563 11 21239158 to 21239178 20 + TSS region transcription start site region 100563
Tssr100564 11 21239279 to 21239302 23 + TSS region transcription start site region 100564
Vps54 11 21239281 to 21321136 81855 + protein coding gene VPS54 GARP complex subunit
Tssr107060 11 21239331 to 21239353 22 - TSS region transcription start site region 107060
Tssr107061 11 21239530 to 21239548 18 - TSS region transcription start site region 107061
Tssr107062 11 21239694 to 21239716 22 - TSS region transcription start site region 107062
Tssr100565 11 21239973 to 21239977 4 + TSS region transcription start site region 100565
Tssr100566 11 21242627 to 21242677 50 + TSS region transcription start site region 100566
Tssr100567 11 21244301 to 21244307 6 + TSS region transcription start site region 100567
Gm23582 11 21249422 to 21249560 138 - snoRNA gene predicted gene, 23582
Tssr100568 11 21255931 to 21255936 5 + TSS region transcription start site region 100568
Tssr100569 11 21264994 to 21265005 11 + TSS region transcription start site region 100569
Gm18817 11 21265255 to 21266420 1165 + pseudogene predicted gene, 18817
Tssr100570 11 21272145 to 21272180 35 + TSS region transcription start site region 100570
Gm12039 11 21280045 to 21280224 179 - pseudogene predicted gene 12039
Tssr100571 11 21283384 to 21283432 48 + TSS region transcription start site region 100571
Tssr3439 11 21286493 to 21286506 13 + TSS region transcription start site region 3439
Gm12042 11 21295560 to 21295860 300 + pseudogene predicted gene 12042
Ugp2 11 21321138 to 21371201 50063 - protein coding gene UDP-glucose pyrophosphorylase 2
Mir1933 11 21344588 to 21344675 87 - miRNA gene microRNA 1933
Tssr107063 11 21365883 to 21365892 9 - TSS region transcription start site region 107063
Gm12043 11 21370400 to 21374161 3761 + unclassified non-coding RNA gene predicted gene 12043
Cpgi2630 11 21370414 to 21371763 1349 CpG island CpG island 2630
Tssr107064 11 21370452 to 21370485 33 - TSS region transcription start site region 107064
Tssr107065 11 21370572 to 21370583 11 - TSS region transcription start site region 107065
Tssr107066 11 21370647 to 21370656 9 - TSS region transcription start site region 107066
Tssr107067 11 21370666 to 21370673 7 - TSS region transcription start site region 107067
Tssr107068 11 21370678 to 21370689 11 - TSS region transcription start site region 107068
Tssr100572 11 21370733 to 21370737 4 + TSS region transcription start site region 100572
Tssr3440 11 21370771 to 21370778 7 - TSS region transcription start site region 3440
Tssr3441 11 21370801 to 21370806 5 - TSS region transcription start site region 3441
Tssr3442 11 21370992 to 21371026 34 + TSS region transcription start site region 3442
Tssr107069 11 21371143 to 21371221 78 - TSS region transcription start site region 107069
Tssr107070 11 21371264 to 21371276 12 - TSS region transcription start site region 107070