Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:20510643-21770672

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Hjk17 11 20530141 to 20530344 203 DNA segment DNA segment, Chr 11, H. Jockusch 17
Cpgi2622 11 20532064 to 20532507 443 CpG island CpG island 2622
Tssr100505 11 20532072 to 20532087 15 + TSS region transcription start site region 100505
D11Mit343 11 20539867 to 20539972 105 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 343
Cpgi2623 11 20542129 to 20543995 1866 CpG island CpG island 2623
Tssr100506 11 20542870 to 20542876 6 + TSS region transcription start site region 100506
Tssr100507 11 20542889 to 20542900 11 + TSS region transcription start site region 100507
Tssr107028 11 20542895 to 20542907 12 - TSS region transcription start site region 107028
Tssr100508 11 20542913 to 20542922 9 + TSS region transcription start site region 100508
Tssr100509 11 20542925 to 20542937 12 + TSS region transcription start site region 100509
Tssr100510 11 20543130 to 20543183 53 + TSS region transcription start site region 100510
Tssr100511 11 20543246 to 20543268 22 + TSS region transcription start site region 100511
Sertad2 11 20543253 to 20653021 109768 + protein coding gene SERTA domain containing 2
Tssr100512 11 20543307 to 20543336 29 + TSS region transcription start site region 100512
Gm12035 11 20574573 to 20575189 616 - pseudogene predicted gene 12035
D11Mit80 11 20577139 to 20577313 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 80
Tssr100513 11 20594041 to 20594044 3 + TSS region transcription start site region 100513
D11Hjk6 11 20607184 to 20607336 152 DNA segment DNA segment, Chr 11, H. Jockusch 6
D11Hjk16 11 20612512 to 20612815 303 DNA segment DNA segment, Chr 11, H. Jockusch 16
Cpgi2624 11 20631379 to 20632577 1198 CpG island CpG island 2624
Tssr107029 11 20631721 to 20631725 4 - TSS region transcription start site region 107029
Tssr107030 11 20631834 to 20631841 7 - TSS region transcription start site region 107030
Tssr100514 11 20631956 to 20632006 50 + TSS region transcription start site region 100514
Tssr100515 11 20632048 to 20632059 11 + TSS region transcription start site region 100515
Tssr100516 11 20632097 to 20632108 11 + TSS region transcription start site region 100516
Tssr100517 11 20647149 to 20647156 7 + TSS region transcription start site region 100517
Tssr100518 11 20647159 to 20647179 20 + TSS region transcription start site region 100518
Tssr100519 11 20647234 to 20647239 5 + TSS region transcription start site region 100519
Tssr100520 11 20647248 to 20647253 5 + TSS region transcription start site region 100520
Cpgi2625 11 20656820 to 20657084 264 CpG island CpG island 2625
Tssr107031 11 20656879 to 20656905 26 - TSS region transcription start site region 107031
Aftph 11 20685084 to 20741556 56472 - protein coding gene aftiphilin
4833432P19Rik 11 20693702 to 20694940 1238 unclassified gene RIKEN cDNA 4833432P19 gene
Tssr107032 11 20694915 to 20694919 4 - TSS region transcription start site region 107032
Tssr107033 11 20699581 to 20699594 13 - TSS region transcription start site region 107033
Tssr107034 11 20700847 to 20700851 4 - TSS region transcription start site region 107034
Tssr107035 11 20712220 to 20712238 18 - TSS region transcription start site region 107035
Tssr107036 11 20712242 to 20712247 5 - TSS region transcription start site region 107036
Tssr107037 11 20712256 to 20712329 73 - TSS region transcription start site region 107037
Gm12036 11 20729420 to 20729949 529 + pseudogene predicted gene 12036
Cpgi2626 11 20740520 to 20741957 1437 CpG island CpG island 2626
Tssr100521 11 20740587 to 20740645 58 + TSS region transcription start site region 100521
Tssr100522 11 20740654 to 20740681 27 + TSS region transcription start site region 100522
Tssr100523 11 20740693 to 20740725 32 + TSS region transcription start site region 100523
Gm46272 11 20741311 to 20743384 2073 + protein coding gene predicted gene, 46272
Tssr107038 11 20741354 to 20741365 11 - TSS region transcription start site region 107038
Tssr107039 11 20741447 to 20741524 77 - TSS region transcription start site region 107039
Tssr107040 11 20741580 to 20741622 42 - TSS region transcription start site region 107040
Tssr100524 11 20741754 to 20741787 33 + TSS region transcription start site region 100524
4930434J08Rik 11 20741763 to 20744965 3202 unclassified gene RIKEN cDNA 4930434J08 gene
Tssr107041 11 20741847 to 20741908 61 - TSS region transcription start site region 107041
Tssr107042 11 20741933 to 20741944 11 - TSS region transcription start site region 107042
Tssr107043 11 20741981 to 20741992 11 - TSS region transcription start site region 107043
Tssr107044 11 20742004 to 20742015 11 - TSS region transcription start site region 107044
Tssr100525 11 20742299 to 20742309 10 + TSS region transcription start site region 100525
Tssr107045 11 20770753 to 20770757 4 - TSS region transcription start site region 107045
Gm32213 11 20794620 to 20821244 26624 + lncRNA gene predicted gene, 32213
Lgalsl 11 20823576 to 20831056 7480 - protein coding gene lectin, galactoside binding-like
Cpgi2627 11 20830278 to 20831680 1402 CpG island CpG island 2627
Tssr3438 11 20830778 to 20830801 23 - TSS region transcription start site region 3438
Tssr107046 11 20831009 to 20831053 44 - TSS region transcription start site region 107046
Tssr107047 11 20831060 to 20831074 14 - TSS region transcription start site region 107047
Tssr107048 11 20831173 to 20831189 16 - TSS region transcription start site region 107048
Tssr107049 11 20831204 to 20831219 15 - TSS region transcription start site region 107049
Tssr107050 11 20831223 to 20831265 42 - TSS region transcription start site region 107050
Tssr107051 11 20831310 to 20831332 22 - TSS region transcription start site region 107051
Gm12037 11 20831481 to 20831919 438 - lincRNA gene predicted gene 12037
Gm12038 11 20847476 to 20847682 206 - pseudogene predicted gene 12038
Gm22807 11 20847753 to 20847881 128 - snoRNA gene predicted gene, 22807
Tssr107052 11 20881487 to 20881508 21 - TSS region transcription start site region 107052
Gm39608 11 20894468 to 20898879 4411 - lncRNA gene predicted gene, 39608
Tssr107053 11 20898685 to 20898693 8 - TSS region transcription start site region 107053
Tssr107054 11 20898726 to 20898743 17 - TSS region transcription start site region 107054
D11Hjk10 11 20908915 to 20909024 109 DNA segment DNA segment, Chr 11, H. Jockusch 10
Gm46273 11 20911601 to 20917578 5977 - lncRNA gene predicted gene, 46273
Tssr100526 11 20917294 to 20917310 16 + TSS region transcription start site region 100526
Gm32293 11 20917339 to 20966444 49105 + lncRNA gene predicted gene, 32293
Gm23681 11 20937576 to 20937701 125 - miRNA gene predicted gene, 23681
D11Hjk30 11 20957785 to 20958308 523 DNA segment DNA segment, Chr 11, H. Jockusch 30
Tssr107055 11 21046282 to 21046329 47 - TSS region transcription start site region 107055
Tssr100527 11 21048157 to 21048171 14 + TSS region transcription start site region 100527
Tssr100528 11 21048250 to 21048259 9 + TSS region transcription start site region 100528
Tssr100529 11 21048900 to 21048937 37 + TSS region transcription start site region 100529
Gm40824 11 21050355 to 21110192 59837 + protein coding gene predicted gene, 40824
Cpgi2628 11 21090941 to 21092199 1258 CpG island CpG island 2628
Tssr100530 11 21091135 to 21091156 21 + TSS region transcription start site region 100530
Tssr100531 11 21091297 to 21091339 42 + TSS region transcription start site region 100531
Peli1 11 21091324 to 21150327 59003 + protein coding gene pellino 1
Tssr100532 11 21091371 to 21091401 30 + TSS region transcription start site region 100532
Tssr107056 11 21091964 to 21091973 9 - TSS region transcription start site region 107056
Tssr100533 11 21092549 to 21092560 11 + TSS region transcription start site region 100533
Tssr100534 11 21092940 to 21092971 31 + TSS region transcription start site region 100534
Tssr100535 11 21093030 to 21093033 3 + TSS region transcription start site region 100535
Tssr100536 11 21095731 to 21095748 17 + TSS region transcription start site region 100536
Tssr100537 11 21095814 to 21095822 8 + TSS region transcription start site region 100537
Tssr100538 11 21097358 to 21097377 19 + TSS region transcription start site region 100538
2610024D14Rik 11 21099534 to 21099827 293 + pseudogene RIKEN cDNA 2610024D14 gene
Tssr100539 11 21101024 to 21101058 34 + TSS region transcription start site region 100539
Tssr100540 11 21102503 to 21102532 29 + TSS region transcription start site region 100540
Tssr100541 11 21105926 to 21105937 11 + TSS region transcription start site region 100541
Tssr100542 11 21105960 to 21105979 19 + TSS region transcription start site region 100542
Tssr100543 11 21105997 to 21106020 23 + TSS region transcription start site region 100543
Tssr100544 11 21115316 to 21115354 38 + TSS region transcription start site region 100544
Tssr100545 11 21116853 to 21116865 12 + TSS region transcription start site region 100545
Tssr100546 11 21116868 to 21116879 11 + TSS region transcription start site region 100546
Tssr100547 11 21116902 to 21116914 12 + TSS region transcription start site region 100547
Tssr100548 11 21118178 to 21118220 42 + TSS region transcription start site region 100548
Tssr100549 11 21136666 to 21136669 3 + TSS region transcription start site region 100549
Tssr100550 11 21140643 to 21140672 29 + TSS region transcription start site region 100550
Tssr100551 11 21148820 to 21148834 14 + TSS region transcription start site region 100551
Tssr100552 11 21149059 to 21149083 24 + TSS region transcription start site region 100552
Tssr100553 11 21149089 to 21149102 13 + TSS region transcription start site region 100553
Tssr100554 11 21149202 to 21149213 11 + TSS region transcription start site region 100554
Tssr100555 11 21149713 to 21149724 11 + TSS region transcription start site region 100555
Tssr107057 11 21174602 to 21174626 24 - TSS region transcription start site region 107057
Gm22600 11 21197708 to 21197976 268 - unclassified non-coding RNA gene predicted gene, 22600
Gm12040 11 21206410 to 21206946 536 - pseudogene predicted gene 12040
Tssr107058 11 21207035 to 21207049 14 - TSS region transcription start site region 107058
Tssr100556 11 21219534 to 21219575 41 + TSS region transcription start site region 100556
Tssr100557 11 21220981 to 21221015 34 + TSS region transcription start site region 100557
Gm12041 11 21227655 to 21228256 601 + pseudogene predicted gene 12041
Tssr107059 11 21238173 to 21238176 3 - TSS region transcription start site region 107059
Cpgi2629 11 21238418 to 21239680 1262 CpG island CpG island 2629
Tssr100558 11 21238515 to 21238536 21 + TSS region transcription start site region 100558
Tssr100559 11 21238564 to 21238579 15 + TSS region transcription start site region 100559
Tssr100560 11 21238689 to 21238745 56 + TSS region transcription start site region 100560
Tssr100561 11 21238875 to 21238966 91 + TSS region transcription start site region 100561
Tssr100562 11 21239103 to 21239147 44 + TSS region transcription start site region 100562
Tssr100563 11 21239158 to 21239178 20 + TSS region transcription start site region 100563
Tssr100564 11 21239279 to 21239302 23 + TSS region transcription start site region 100564
Vps54 11 21239281 to 21321136 81855 + protein coding gene VPS54 GARP complex subunit
Tssr107060 11 21239331 to 21239353 22 - TSS region transcription start site region 107060
Tssr107061 11 21239530 to 21239548 18 - TSS region transcription start site region 107061
Tssr107062 11 21239694 to 21239716 22 - TSS region transcription start site region 107062
Tssr100565 11 21239973 to 21239977 4 + TSS region transcription start site region 100565
Tssr100566 11 21242627 to 21242677 50 + TSS region transcription start site region 100566
Tssr100567 11 21244301 to 21244307 6 + TSS region transcription start site region 100567
Gm23582 11 21249422 to 21249560 138 - snoRNA gene predicted gene, 23582
Tssr100568 11 21255931 to 21255936 5 + TSS region transcription start site region 100568
Tssr100569 11 21264994 to 21265005 11 + TSS region transcription start site region 100569
Gm18817 11 21265255 to 21266420 1165 + pseudogene predicted gene, 18817
Tssr100570 11 21272145 to 21272180 35 + TSS region transcription start site region 100570
Gm12039 11 21280045 to 21280224 179 - pseudogene predicted gene 12039
Tssr100571 11 21283384 to 21283432 48 + TSS region transcription start site region 100571
Tssr3439 11 21286493 to 21286506 13 + TSS region transcription start site region 3439
Gm12042 11 21295560 to 21295860 300 + pseudogene predicted gene 12042
Ugp2 11 21321138 to 21371201 50063 - protein coding gene UDP-glucose pyrophosphorylase 2
Mir1933 11 21344588 to 21344675 87 - miRNA gene microRNA 1933
Tssr107063 11 21365883 to 21365892 9 - TSS region transcription start site region 107063
Gm12043 11 21370400 to 21374161 3761 + unclassified non-coding RNA gene predicted gene 12043
Cpgi2630 11 21370414 to 21371763 1349 CpG island CpG island 2630
Tssr107064 11 21370452 to 21370485 33 - TSS region transcription start site region 107064
Tssr107065 11 21370572 to 21370583 11 - TSS region transcription start site region 107065
Tssr107066 11 21370647 to 21370656 9 - TSS region transcription start site region 107066
Tssr107067 11 21370666 to 21370673 7 - TSS region transcription start site region 107067
Tssr107068 11 21370678 to 21370689 11 - TSS region transcription start site region 107068
Tssr100572 11 21370733 to 21370737 4 + TSS region transcription start site region 100572
Tssr3440 11 21370771 to 21370778 7 - TSS region transcription start site region 3440
Tssr3441 11 21370801 to 21370806 5 - TSS region transcription start site region 3441
Tssr3442 11 21370992 to 21371026 34 + TSS region transcription start site region 3442
Tssr107069 11 21371143 to 21371221 78 - TSS region transcription start site region 107069
Tssr107070 11 21371264 to 21371276 12 - TSS region transcription start site region 107070
D11Hjk11 11 21428638 to 21429180 542 DNA segment DNA segment, Chr 11, H. Jockusch 11
D11Mit294 11 21429418 to 21429532 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 294
Eae44a 11 21429532 to 4557896 -16871636 QTL experimental allergic encephalomyelitis susceptibility 44a
Gm29812 11 21437838 to 21438938 1100 - pseudogene predicted gene, 29812
Gm12044 11 21451142 to 21451354 212 - pseudogene predicted gene 12044
Tssr100573 11 21456793 to 21456797 4 + TSS region transcription start site region 100573
Gm12045 11 21491314 to 21491817 503 + pseudogene predicted gene 12045
Gm12046 11 21493625 to 21493955 330 - pseudogene predicted gene 12046
4932414J04Rik 11 21494730 to 21511178 16448 - lincRNA gene RIKEN cDNA 4932414J04 gene
Mdh1 11 21556692 to 21571934 15242 - protein coding gene malate dehydrogenase 1, NAD (soluble)
Tssr107071 11 21557280 to 21557307 27 - TSS region transcription start site region 107071
Gm22990 11 21564561 to 21564649 88 - miRNA gene predicted gene, 22990
Tssr107072 11 21565888 to 21565907 19 - TSS region transcription start site region 107072
Tssr107073 11 21569097 to 21569100 3 - TSS region transcription start site region 107073
Tssr107074 11 21569968 to 21569971 3 - TSS region transcription start site region 107074
Cpgi2631 11 21571584 to 21572500 916 CpG island CpG island 2631
Tssr107075 11 21571774 to 21571780 6 - TSS region transcription start site region 107075
Tssr107076 11 21571786 to 21571797 11 - TSS region transcription start site region 107076
Tssr107077 11 21571798 to 21571827 29 - TSS region transcription start site region 107077
Tssr107078 11 21572037 to 21572049 12 - TSS region transcription start site region 107078
Tssr107079 11 21572193 to 21572211 18 - TSS region transcription start site region 107079
Tssr100574 11 21572221 to 21572232 11 + TSS region transcription start site region 100574
Wdpcp 11 21572235 to 21898989 326754 + protein coding gene WD repeat containing planar cell polarity effector
Tssr100575 11 21572273 to 21572334 61 + TSS region transcription start site region 100575
Tssr100576 11 21601141 to 21601144 3 + TSS region transcription start site region 100576
Pgam1-ps1 11 21683308 to 21684056 748 - pseudogene phosphoglycerate mutase 1, pseudogene 1
Tssr107080 11 21684073 to 21684105 32 - TSS region transcription start site region 107080
D11Hjk27 11 21715439 to 21716919 1480 DNA segment DNA segment, Chr 11, H. Jockusch 27