Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:20310129-20600628

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc1a4 11 20302180 to 20332713 30533 - protein coding gene solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Tssr100502 11 20316691 to 20316695 4 + TSS region transcription start site region 100502
D930023I05Rik 11 20322357 to 20325447 3090 unclassified gene RIKEN cDNA D930023I05 gene
Tssr107023 11 20331304 to 20331308 4 - TSS region transcription start site region 107023
Cpgi2619 11 20331890 to 20333292 1402 CpG island CpG island 2619
Tssr107024 11 20332570 to 20332603 33 - TSS region transcription start site region 107024
Tssr107025 11 20332654 to 20332688 34 - TSS region transcription start site region 107025
Tssr107026 11 20332689 to 20332774 85 - TSS region transcription start site region 107026
Gm12033 11 20335012 to 20336013 1001 - pseudogene predicted gene 12033
Gm39605 11 20375532 to 20380250 4718 - lncRNA gene predicted gene, 39605
Cpgi2620 11 20446313 to 20446567 254 CpG island CpG island 2620
Gm12034 11 20446412 to 20446810 398 + pseudogene predicted gene 12034
Gm39606 11 20452962 to 20456035 3073 + lncRNA gene predicted gene, 39606
Tssr100503 11 20453099 to 20453114 15 + TSS region transcription start site region 100503
Cpgi2621 11 20455129 to 20455628 499 CpG island CpG island 2621
Tssr107027 11 20464658 to 20464670 12 - TSS region transcription start site region 107027
Gm39607 11 20469348 to 20507376 38028 + lncRNA gene predicted gene, 39607
Tssr100504 11 20469531 to 20469546 15 + TSS region transcription start site region 100504
Gm32142 11 20476408 to 20478425 2017 - lncRNA gene predicted gene, 32142
D11Hjk17 11 20530141 to 20530344 203 DNA segment DNA segment, Chr 11, H. Jockusch 17
Cpgi2622 11 20532064 to 20532507 443 CpG island CpG island 2622
Tssr100505 11 20532072 to 20532087 15 + TSS region transcription start site region 100505
D11Mit343 11 20539867 to 20539972 105 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 343
Cpgi2623 11 20542129 to 20543995 1866 CpG island CpG island 2623
Tssr100506 11 20542870 to 20542876 6 + TSS region transcription start site region 100506
Tssr100507 11 20542889 to 20542900 11 + TSS region transcription start site region 100507
Tssr107028 11 20542895 to 20542907 12 - TSS region transcription start site region 107028
Tssr100508 11 20542913 to 20542922 9 + TSS region transcription start site region 100508
Tssr100509 11 20542925 to 20542937 12 + TSS region transcription start site region 100509
Tssr100510 11 20543130 to 20543183 53 + TSS region transcription start site region 100510
Tssr100511 11 20543246 to 20543268 22 + TSS region transcription start site region 100511
Sertad2 11 20543253 to 20653021 109768 + protein coding gene SERTA domain containing 2
Tssr100512 11 20543307 to 20543336 29 + TSS region transcription start site region 100512
Gm12035 11 20574573 to 20575189 616 - pseudogene predicted gene 12035
D11Mit80 11 20577139 to 20577313 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 80
Tssr100513 11 20594041 to 20594044 3 + TSS region transcription start site region 100513