Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:20303246-20783268

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc1a4 11 20302180 to 20332713 30533 - protein coding gene solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Tssr100502 11 20316691 to 20316695 4 + TSS region transcription start site region 100502
D930023I05Rik 11 20322357 to 20325447 3090 unclassified gene RIKEN cDNA D930023I05 gene
Tssr107023 11 20331304 to 20331308 4 - TSS region transcription start site region 107023
Cpgi2619 11 20331890 to 20333292 1402 CpG island CpG island 2619
Tssr107024 11 20332570 to 20332603 33 - TSS region transcription start site region 107024
Tssr107025 11 20332654 to 20332688 34 - TSS region transcription start site region 107025
Tssr107026 11 20332689 to 20332774 85 - TSS region transcription start site region 107026
Gm12033 11 20335012 to 20336013 1001 - pseudogene predicted gene 12033
Gm39605 11 20375532 to 20380250 4718 - lncRNA gene predicted gene, 39605
Cpgi2620 11 20446313 to 20446567 254 CpG island CpG island 2620
Gm12034 11 20446412 to 20446810 398 + pseudogene predicted gene 12034
Gm39606 11 20452962 to 20456035 3073 + lncRNA gene predicted gene, 39606
Tssr100503 11 20453099 to 20453114 15 + TSS region transcription start site region 100503
Cpgi2621 11 20455129 to 20455628 499 CpG island CpG island 2621
Tssr107027 11 20464658 to 20464670 12 - TSS region transcription start site region 107027
Gm39607 11 20469348 to 20507376 38028 + lncRNA gene predicted gene, 39607
Tssr100504 11 20469531 to 20469546 15 + TSS region transcription start site region 100504
Gm32142 11 20476408 to 20478425 2017 - lncRNA gene predicted gene, 32142
D11Hjk17 11 20530141 to 20530344 203 DNA segment DNA segment, Chr 11, H. Jockusch 17
Cpgi2622 11 20532064 to 20532507 443 CpG island CpG island 2622
Tssr100505 11 20532072 to 20532087 15 + TSS region transcription start site region 100505
D11Mit343 11 20539867 to 20539972 105 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 343
Cpgi2623 11 20542129 to 20543995 1866 CpG island CpG island 2623
Tssr100506 11 20542870 to 20542876 6 + TSS region transcription start site region 100506
Tssr100507 11 20542889 to 20542900 11 + TSS region transcription start site region 100507
Tssr107028 11 20542895 to 20542907 12 - TSS region transcription start site region 107028
Tssr100508 11 20542913 to 20542922 9 + TSS region transcription start site region 100508
Tssr100509 11 20542925 to 20542937 12 + TSS region transcription start site region 100509
Tssr100510 11 20543130 to 20543183 53 + TSS region transcription start site region 100510
Tssr100511 11 20543246 to 20543268 22 + TSS region transcription start site region 100511
Sertad2 11 20543253 to 20653021 109768 + protein coding gene SERTA domain containing 2
Tssr100512 11 20543307 to 20543336 29 + TSS region transcription start site region 100512
Gm12035 11 20574573 to 20575189 616 - pseudogene predicted gene 12035
D11Mit80 11 20577139 to 20577313 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 80
Tssr100513 11 20594041 to 20594044 3 + TSS region transcription start site region 100513
D11Hjk6 11 20607184 to 20607336 152 DNA segment DNA segment, Chr 11, H. Jockusch 6
D11Hjk16 11 20612512 to 20612815 303 DNA segment DNA segment, Chr 11, H. Jockusch 16
Cpgi2624 11 20631379 to 20632577 1198 CpG island CpG island 2624
Tssr107029 11 20631721 to 20631725 4 - TSS region transcription start site region 107029
Tssr107030 11 20631834 to 20631841 7 - TSS region transcription start site region 107030
Tssr100514 11 20631956 to 20632006 50 + TSS region transcription start site region 100514
Tssr100515 11 20632048 to 20632059 11 + TSS region transcription start site region 100515
Tssr100516 11 20632097 to 20632108 11 + TSS region transcription start site region 100516
Tssr100517 11 20647149 to 20647156 7 + TSS region transcription start site region 100517
Tssr100518 11 20647159 to 20647179 20 + TSS region transcription start site region 100518
Tssr100519 11 20647234 to 20647239 5 + TSS region transcription start site region 100519
Tssr100520 11 20647248 to 20647253 5 + TSS region transcription start site region 100520
Cpgi2625 11 20656820 to 20657084 264 CpG island CpG island 2625
Tssr107031 11 20656879 to 20656905 26 - TSS region transcription start site region 107031
Aftph 11 20685084 to 20741556 56472 - protein coding gene aftiphilin
4833432P19Rik 11 20693702 to 20694940 1238 unclassified gene RIKEN cDNA 4833432P19 gene
Tssr107032 11 20694915 to 20694919 4 - TSS region transcription start site region 107032
Tssr107033 11 20699581 to 20699594 13 - TSS region transcription start site region 107033
Tssr107034 11 20700847 to 20700851 4 - TSS region transcription start site region 107034
Tssr107035 11 20712220 to 20712238 18 - TSS region transcription start site region 107035
Tssr107036 11 20712242 to 20712247 5 - TSS region transcription start site region 107036
Tssr107037 11 20712256 to 20712329 73 - TSS region transcription start site region 107037
Gm12036 11 20729420 to 20729949 529 + pseudogene predicted gene 12036
Cpgi2626 11 20740520 to 20741957 1437 CpG island CpG island 2626
Tssr100521 11 20740587 to 20740645 58 + TSS region transcription start site region 100521
Tssr100522 11 20740654 to 20740681 27 + TSS region transcription start site region 100522
Tssr100523 11 20740693 to 20740725 32 + TSS region transcription start site region 100523
Gm46272 11 20741311 to 20743384 2073 + protein coding gene predicted gene, 46272
Tssr107038 11 20741354 to 20741365 11 - TSS region transcription start site region 107038
Tssr107039 11 20741447 to 20741524 77 - TSS region transcription start site region 107039
Tssr107040 11 20741580 to 20741622 42 - TSS region transcription start site region 107040
Tssr100524 11 20741754 to 20741787 33 + TSS region transcription start site region 100524
4930434J08Rik 11 20741763 to 20744965 3202 unclassified gene RIKEN cDNA 4930434J08 gene
Tssr107041 11 20741847 to 20741908 61 - TSS region transcription start site region 107041
Tssr107042 11 20741933 to 20741944 11 - TSS region transcription start site region 107042
Tssr107043 11 20741981 to 20741992 11 - TSS region transcription start site region 107043
Tssr107044 11 20742004 to 20742015 11 - TSS region transcription start site region 107044
Tssr100525 11 20742299 to 20742309 10 + TSS region transcription start site region 100525
Tssr107045 11 20770753 to 20770757 4 - TSS region transcription start site region 107045