Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:20029360-20469433

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39603 11 20024830 to 20036612 11782 - lncRNA gene predicted gene, 39603
Gm32080 11 20036663 to 20040477 3814 + lncRNA gene predicted gene, 32080
Tssr100488 11 20039075 to 20039078 3 + TSS region transcription start site region 100488
Actr2 11 20062304 to 20112913 50609 - protein coding gene ARP2 actin-related protein 2
Tssr107002 11 20063023 to 20063034 11 - TSS region transcription start site region 107002
Tssr107003 11 20063674 to 20063699 25 - TSS region transcription start site region 107003
Tssr107004 11 20063918 to 20063931 13 - TSS region transcription start site region 107004
Tssr107005 11 20064233 to 20064265 32 - TSS region transcription start site region 107005
Tssr107006 11 20077234 to 20077250 16 - TSS region transcription start site region 107006
Tssr107007 11 20080601 to 20080605 4 - TSS region transcription start site region 107007
Tssr107008 11 20083959 to 20084008 49 - TSS region transcription start site region 107008
Tssr107009 11 20089624 to 20089635 11 - TSS region transcription start site region 107009
Tssr107010 11 20089638 to 20089647 9 - TSS region transcription start site region 107010
Cpgi2616 11 20112280 to 20113386 1106 CpG island CpG island 2616
Tssr100489 11 20112447 to 20112480 33 + TSS region transcription start site region 100489
Tssr100490 11 20112486 to 20112498 12 + TSS region transcription start site region 100490
Tssr107011 11 20112876 to 20112925 49 - TSS region transcription start site region 107011
Tssr100491 11 20113059 to 20113094 35 + TSS region transcription start site region 100491
Tssr100492 11 20138079 to 20138111 32 + TSS region transcription start site region 100492
Tssr107012 11 20140303 to 20140316 13 - TSS region transcription start site region 107012
Tssr107013 11 20140362 to 20140377 15 - TSS region transcription start site region 107013
Tssr100493 11 20140562 to 20140584 22 + TSS region transcription start site region 100493
Gm12030 11 20142579 to 20142790 211 + pseudogene predicted gene 12030
Gm12031 11 20145567 to 20146344 777 - lincRNA gene predicted gene 12031
Tssr107014 11 20153700 to 20153745 45 - TSS region transcription start site region 107014
Tssr107015 11 20153774 to 20153777 3 - TSS region transcription start site region 107015
D11Mit171.2 11 20188425 to 20188541 116 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 171.2
D11Mit171 11 20188519 to 20188654 135 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 171
Gm26253 11 20194633 to 20194735 102 - snRNA gene predicted gene, 26253
Tssr107016 11 20200805 to 20200809 4 - TSS region transcription start site region 107016
Cpgi2617 11 20200846 to 20202132 1286 CpG island CpG island 2617
Tssr107017 11 20200907 to 20200923 16 - TSS region transcription start site region 107017
Tssr107018 11 20200927 to 20200938 11 - TSS region transcription start site region 107018
Tssr100494 11 20201406 to 20201448 42 + TSS region transcription start site region 100494
Rab1a 11 20201602 to 20226856 25254 + protein coding gene RAB1A, member RAS oncogene family
Tssr107019 11 20202464 to 20202483 19 - TSS region transcription start site region 107019
D11Hjk8 11 20209527 to 20209884 357 DNA segment DNA segment, Chr 11, H. Jockusch 8
D11Mit306 11 20216896 to 20217014 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 306
Tssr100495 11 20224999 to 20225017 18 + TSS region transcription start site region 100495
Tssr100496 11 20226031 to 20226112 81 + TSS region transcription start site region 100496
Cep68 11 20227037 to 20249429 22392 - protein coding gene centrosomal protein 68
Tssr100497 11 20227921 to 20227945 24 + TSS region transcription start site region 100497
Tssr100498 11 20231464 to 20231476 12 + TSS region transcription start site region 100498
D11Hjk3 11 20242194 to 20242255 61 DNA segment DNA segment, Chr 11, H. Jockusch 3
Cpgi2618 11 20248848 to 20249887 1039 CpG island CpG island 2618
Tssr100499 11 20248952 to 20248958 6 + TSS region transcription start site region 100499
Tssr107020 11 20249360 to 20249433 73 - TSS region transcription start site region 107020
Tssr100500 11 20249575 to 20249594 19 + TSS region transcription start site region 100500
Tssr100501 11 20249606 to 20249625 19 + TSS region transcription start site region 100501
Gm39604 11 20254513 to 20263189 8676 + lncRNA gene predicted gene, 39604
Tssr107021 11 20289687 to 20289693 6 - TSS region transcription start site region 107021
Rpl12-ps2 11 20290064 to 20290384 320 - pseudogene ribosomal proteimn L12-ps2
Tssr107022 11 20290474 to 20290475 1 - TSS region transcription start site region 107022
Slc1a4 11 20302180 to 20332713 30533 - protein coding gene solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Tssr100502 11 20316691 to 20316695 4 + TSS region transcription start site region 100502
D930023I05Rik 11 20322357 to 20325447 3090 unclassified gene RIKEN cDNA D930023I05 gene
Tssr107023 11 20331304 to 20331308 4 - TSS region transcription start site region 107023
Cpgi2619 11 20331890 to 20333292 1402 CpG island CpG island 2619
Tssr107024 11 20332570 to 20332603 33 - TSS region transcription start site region 107024
Tssr107025 11 20332654 to 20332688 34 - TSS region transcription start site region 107025
Tssr107026 11 20332689 to 20332774 85 - TSS region transcription start site region 107026
Gm12033 11 20335012 to 20336013 1001 - pseudogene predicted gene 12033
Gm39605 11 20375532 to 20380250 4718 - lncRNA gene predicted gene, 39605
Cpgi2620 11 20446313 to 20446567 254 CpG island CpG island 2620
Gm12034 11 20446412 to 20446810 398 + pseudogene predicted gene 12034
Gm39606 11 20452962 to 20456035 3073 + lncRNA gene predicted gene, 39606
Tssr100503 11 20453099 to 20453114 15 + TSS region transcription start site region 100503
Cpgi2621 11 20455129 to 20455628 499 CpG island CpG island 2621
Tssr107027 11 20464658 to 20464670 12 - TSS region transcription start site region 107027
Gm39607 11 20469348 to 20507376 38028 + lncRNA gene predicted gene, 39607