Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:18817315-20327430

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31674 11 18747793 to 18822973 75180 + lncRNA gene predicted gene, 31674
Tssr3434 11 18829744 to 18829753 9 + TSS region transcription start site region 3434
8430419K02Rik 11 18845851 to 18872180 26329 - lncRNA gene RIKEN cDNA 8430419K02 gene
Cpgi2599 11 18871271 to 18872080 809 CpG island CpG island 2599
Cpgi2600 11 18877021 to 18877407 386 CpG island CpG island 2600
Cpgi2601 11 18877593 to 18878174 581 CpG island CpG island 2601
Meis1 11 18879817 to 19018985 139168 - protein coding gene Meis homeobox 1
Gm37818 11 18884623 to 18887791 3168 - unclassified gene predicted gene, 37818
Tssr106987 11 18885819 to 18885845 26 - TSS region transcription start site region 106987
2900018N21Rik 11 18888261 to 18889840 1579 - unclassified gene RIKEN cDNA 2900018N21 gene
Tssr106988 11 18890985 to 18891002 17 - TSS region transcription start site region 106988
Tssr106989 11 18891119 to 18891131 12 - TSS region transcription start site region 106989
Tssr106990 11 18891181 to 18891201 20 - TSS region transcription start site region 106990
2610001A08Rik 11 19005607 to 19006473 866 - unclassified gene RIKEN cDNA 2610001A08 gene
Cpgi2602 11 19007786 to 19008445 659 CpG island CpG island 2602
Tssr3435 11 19009079 to 19009098 19 + TSS region transcription start site region 3435
Gm16140 11 19009128 to 19011183 2055 + antisense lncRNA gene predicted gene 16140
Cpgi2603 11 19013780 to 19014089 309 CpG island CpG island 2603
Gm16141 11 19013817 to 19015154 1337 + antisense lncRNA gene predicted gene 16141
Cpgi2604 11 19014666 to 19015007 341 CpG island CpG island 2604
Tssr106991 11 19015119 to 19015123 4 - TSS region transcription start site region 106991
Cpgi2605 11 19015826 to 19016332 506 CpG island CpG island 2605
Tssr106992 11 19016693 to 19016704 11 - TSS region transcription start site region 106992
Tssr106993 11 19018403 to 19018428 25 - TSS region transcription start site region 106993
Tssr106994 11 19018431 to 19018486 55 - TSS region transcription start site region 106994
Cpgi2606 11 19018623 to 19020109 1486 CpG island CpG island 2606
Tssr106995 11 19018817 to 19018828 11 - TSS region transcription start site region 106995
Tssr106996 11 19018914 to 19018941 27 - TSS region transcription start site region 106996
Tssr106997 11 19018956 to 19018973 17 - TSS region transcription start site region 106997
Tssr106998 11 19018979 to 19018990 11 - TSS region transcription start site region 106998
Tssr100476 11 19019092 to 19019109 17 + TSS region transcription start site region 100476
Tssr100477 11 19019114 to 19019140 26 + TSS region transcription start site region 100477
Tssr106999 11 19019694 to 19019710 16 - TSS region transcription start site region 106999
Cpgi2607 11 19020359 to 19021165 806 CpG island CpG island 2607
Cpgi2608 11 19026554 to 19027687 1133 CpG island CpG island 2608
Tssr107000 11 19056129 to 19056134 5 - TSS region transcription start site region 107000
4933406G16Rik 11 19065276 to 19075740 10464 + lincRNA gene RIKEN cDNA 4933406G16 gene
Cpgi2609 11 19094347 to 19094561 214 CpG island CpG island 2609
D11Ertd326e 11 19116220 to 19116424 204 DNA segment DNA segment, Chr 11, ERATO Doi 326, expressed
Gm37439 11 19116579 to 19117434 855 - unclassified gene predicted gene, 37439
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
D11Mit170 11 19174204 to 19174319 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 170
Gm12025 11 19360926 to 19361069 143 - pseudogene predicted gene 12025
Gm12026 11 19383685 to 19384708 1023 + pseudogene predicted gene 12026
D11Mit295 11 19572315 to 19572430 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 295
Tssr100478 11 19582828 to 19582834 6 + TSS region transcription start site region 100478
Gm39601 11 19613814 to 19618743 4929 - lncRNA gene predicted gene, 39601
Gm12027 11 19626761 to 19628061 1300 - lincRNA gene predicted gene 12027
D11Hjk21 11 19651198 to 19651496 298 DNA segment DNA segment, Chr 11, H. Jockusch 21
Gm23386 11 19693155 to 19693298 143 - snoRNA gene predicted gene, 23386
Cpgi2610 11 19713698 to 19713987 289 CpG island CpG island 2610
D11Nds14 11 19719780 to 19719964 184 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 14
Tssr100479 11 19720213 to 19720219 6 + TSS region transcription start site region 100479
Glns-ps1 11 19720355 to 19721472 1117 + pseudogene glutamine synthetase pseudogene 1
Cocrb11 11 19720355 to 19721472 1117 QTL cocaine related behavior 11
Gm39602 11 19725864 to 19742707 16843 - lncRNA gene predicted gene, 39602
D11Mit79 11 19745817 to 19745966 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 79
Gm12028 11 19749419 to 19750066 647 - pseudogene predicted gene 12028
D11Hjk22 11 19751344 to 19751728 384 DNA segment DNA segment, Chr 11, H. Jockusch 22
Gm12029 11 19783652 to 19784483 831 + pseudogene predicted gene 12029
Cpgi2611 11 19827257 to 19827485 228 CpG island CpG island 2611
Cpgi2612 11 19919869 to 19920695 826 CpG island CpG island 2612
Cpgi2613 11 19924076 to 19926190 2114 CpG island CpG island 2613
Tssr3436 11 19924096 to 19924107 11 + TSS region transcription start site region 3436
Tssr100480 11 19924168 to 19924184 16 + TSS region transcription start site region 100480
Tssr100481 11 19924265 to 19924276 11 + TSS region transcription start site region 100481
Tssr100482 11 19924354 to 19924368 14 + TSS region transcription start site region 100482
Tssr100483 11 19924403 to 19924458 55 + TSS region transcription start site region 100483
Spred2 11 19924442 to 20024026 99584 + protein coding gene sprouty-related EVH1 domain containing 2
Tssr107001 11 19925497 to 19925512 15 - TSS region transcription start site region 107001
Tssr100484 11 19925969 to 19925974 5 + TSS region transcription start site region 100484
Tssr100485 11 19954185 to 19954189 4 + TSS region transcription start site region 100485
Tssr100486 11 19983135 to 19983146 11 + TSS region transcription start site region 100486
Tssr3437 11 19996945 to 19996960 15 - TSS region transcription start site region 3437
Cpgi2614 11 19998088 to 19998417 329 CpG island CpG island 2614
Cpgi2615 11 20020662 to 20021599 937 CpG island CpG island 2615
Tssr100487 11 20021822 to 20021825 3 + TSS region transcription start site region 100487
Gm39603 11 20024830 to 20036612 11782 - lncRNA gene predicted gene, 39603
Gm32080 11 20036663 to 20040477 3814 + lncRNA gene predicted gene, 32080
Tssr100488 11 20039075 to 20039078 3 + TSS region transcription start site region 100488
Actr2 11 20062304 to 20112913 50609 - protein coding gene ARP2 actin-related protein 2
Tssr107002 11 20063023 to 20063034 11 - TSS region transcription start site region 107002
Tssr107003 11 20063674 to 20063699 25 - TSS region transcription start site region 107003
Tssr107004 11 20063918 to 20063931 13 - TSS region transcription start site region 107004
Tssr107005 11 20064233 to 20064265 32 - TSS region transcription start site region 107005
Tssr107006 11 20077234 to 20077250 16 - TSS region transcription start site region 107006
Tssr107007 11 20080601 to 20080605 4 - TSS region transcription start site region 107007
Tssr107008 11 20083959 to 20084008 49 - TSS region transcription start site region 107008
Tssr107009 11 20089624 to 20089635 11 - TSS region transcription start site region 107009
Tssr107010 11 20089638 to 20089647 9 - TSS region transcription start site region 107010
Cpgi2616 11 20112280 to 20113386 1106 CpG island CpG island 2616
Tssr100489 11 20112447 to 20112480 33 + TSS region transcription start site region 100489
Tssr100490 11 20112486 to 20112498 12 + TSS region transcription start site region 100490
Tssr107011 11 20112876 to 20112925 49 - TSS region transcription start site region 107011
Tssr100491 11 20113059 to 20113094 35 + TSS region transcription start site region 100491
Tssr100492 11 20138079 to 20138111 32 + TSS region transcription start site region 100492
Tssr107012 11 20140303 to 20140316 13 - TSS region transcription start site region 107012
Tssr107013 11 20140362 to 20140377 15 - TSS region transcription start site region 107013
Tssr100493 11 20140562 to 20140584 22 + TSS region transcription start site region 100493
Gm12030 11 20142579 to 20142790 211 + pseudogene predicted gene 12030
Gm12031 11 20145567 to 20146344 777 - lincRNA gene predicted gene 12031
Tssr107014 11 20153700 to 20153745 45 - TSS region transcription start site region 107014
Tssr107015 11 20153774 to 20153777 3 - TSS region transcription start site region 107015
D11Mit171.2 11 20188425 to 20188541 116 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 171.2
D11Mit171 11 20188519 to 20188654 135 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 171
Gm26253 11 20194633 to 20194735 102 - snRNA gene predicted gene, 26253
Tssr107016 11 20200805 to 20200809 4 - TSS region transcription start site region 107016
Cpgi2617 11 20200846 to 20202132 1286 CpG island CpG island 2617
Tssr107017 11 20200907 to 20200923 16 - TSS region transcription start site region 107017
Tssr107018 11 20200927 to 20200938 11 - TSS region transcription start site region 107018
Tssr100494 11 20201406 to 20201448 42 + TSS region transcription start site region 100494
Rab1a 11 20201602 to 20226856 25254 + protein coding gene RAB1A, member RAS oncogene family
Tssr107019 11 20202464 to 20202483 19 - TSS region transcription start site region 107019
D11Hjk8 11 20209527 to 20209884 357 DNA segment DNA segment, Chr 11, H. Jockusch 8
D11Mit306 11 20216896 to 20217014 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 306
Tssr100495 11 20224999 to 20225017 18 + TSS region transcription start site region 100495
Tssr100496 11 20226031 to 20226112 81 + TSS region transcription start site region 100496
Cep68 11 20227037 to 20249429 22392 - protein coding gene centrosomal protein 68
Tssr100497 11 20227921 to 20227945 24 + TSS region transcription start site region 100497
Tssr100498 11 20231464 to 20231476 12 + TSS region transcription start site region 100498
D11Hjk3 11 20242194 to 20242255 61 DNA segment DNA segment, Chr 11, H. Jockusch 3
Cpgi2618 11 20248848 to 20249887 1039 CpG island CpG island 2618
Tssr100499 11 20248952 to 20248958 6 + TSS region transcription start site region 100499
Tssr107020 11 20249360 to 20249433 73 - TSS region transcription start site region 107020
Tssr100500 11 20249575 to 20249594 19 + TSS region transcription start site region 100500
Tssr100501 11 20249606 to 20249625 19 + TSS region transcription start site region 100501
Gm39604 11 20254513 to 20263189 8676 + lncRNA gene predicted gene, 39604
Tssr107021 11 20289687 to 20289693 6 - TSS region transcription start site region 107021
Rpl12-ps2 11 20290064 to 20290384 320 - pseudogene ribosomal proteimn L12-ps2
Tssr107022 11 20290474 to 20290475 1 - TSS region transcription start site region 107022
Slc1a4 11 20302180 to 20332713 30533 - protein coding gene solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
Tssr100502 11 20316691 to 20316695 4 + TSS region transcription start site region 100502
D930023I05Rik 11 20322357 to 20325447 3090 unclassified gene RIKEN cDNA D930023I05 gene