Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:18223817-19805154

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Mit162 11 18246470 to 18246593 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 162
Gm12020 11 18325636 to 18327671 2035 - pseudogene predicted gene 12020
Tssr106985 11 18327044 to 18327067 23 - TSS region transcription start site region 106985
Tssr106986 11 18327256 to 18327259 3 - TSS region transcription start site region 106986
Gm37869 11 18436242 to 18436836 594 + unclassified gene predicted gene, 37869
Gm12022 11 18468403 to 18493277 24874 - lincRNA gene predicted gene 12022
Gm12021 11 18508040 to 18509940 1900 - pseudogene predicted gene 12021
Gm12024 11 18577234 to 18578482 1248 - pseudogene predicted gene 12024
Gm12023 11 18595248 to 18710222 114974 - lincRNA gene predicted gene 12023
Gm23093 11 18738695 to 18738796 101 + snRNA gene predicted gene, 23093
Gm31674 11 18747793 to 18822973 75180 + lncRNA gene predicted gene, 31674
Gm28401 11 18752558 to 18756757 4199 - lincRNA gene predicted gene 28401
Gm23021 11 18802254 to 18802422 168 - snRNA gene predicted gene, 23021
Tssr3434 11 18829744 to 18829753 9 + TSS region transcription start site region 3434
8430419K02Rik 11 18845851 to 18872180 26329 - lncRNA gene RIKEN cDNA 8430419K02 gene
Cpgi2599 11 18871271 to 18872080 809 CpG island CpG island 2599
Cpgi2600 11 18877021 to 18877407 386 CpG island CpG island 2600
Cpgi2601 11 18877593 to 18878174 581 CpG island CpG island 2601
Meis1 11 18879817 to 19018985 139168 - protein coding gene Meis homeobox 1
Gm37818 11 18884623 to 18887791 3168 - unclassified gene predicted gene, 37818
Tssr106987 11 18885819 to 18885845 26 - TSS region transcription start site region 106987
2900018N21Rik 11 18888261 to 18889840 1579 - unclassified gene RIKEN cDNA 2900018N21 gene
Tssr106988 11 18890985 to 18891002 17 - TSS region transcription start site region 106988
Tssr106989 11 18891119 to 18891131 12 - TSS region transcription start site region 106989
Tssr106990 11 18891181 to 18891201 20 - TSS region transcription start site region 106990
2610001A08Rik 11 19005607 to 19006473 866 - unclassified gene RIKEN cDNA 2610001A08 gene
Cpgi2602 11 19007786 to 19008445 659 CpG island CpG island 2602
Tssr3435 11 19009079 to 19009098 19 + TSS region transcription start site region 3435
Gm16140 11 19009128 to 19011183 2055 + antisense lncRNA gene predicted gene 16140
Cpgi2603 11 19013780 to 19014089 309 CpG island CpG island 2603
Gm16141 11 19013817 to 19015154 1337 + antisense lncRNA gene predicted gene 16141
Cpgi2604 11 19014666 to 19015007 341 CpG island CpG island 2604
Tssr106991 11 19015119 to 19015123 4 - TSS region transcription start site region 106991
Cpgi2605 11 19015826 to 19016332 506 CpG island CpG island 2605
Tssr106992 11 19016693 to 19016704 11 - TSS region transcription start site region 106992
Tssr106993 11 19018403 to 19018428 25 - TSS region transcription start site region 106993
Tssr106994 11 19018431 to 19018486 55 - TSS region transcription start site region 106994
Cpgi2606 11 19018623 to 19020109 1486 CpG island CpG island 2606
Tssr106995 11 19018817 to 19018828 11 - TSS region transcription start site region 106995
Tssr106996 11 19018914 to 19018941 27 - TSS region transcription start site region 106996
Tssr106997 11 19018956 to 19018973 17 - TSS region transcription start site region 106997
Tssr106998 11 19018979 to 19018990 11 - TSS region transcription start site region 106998
Tssr100476 11 19019092 to 19019109 17 + TSS region transcription start site region 100476
Tssr100477 11 19019114 to 19019140 26 + TSS region transcription start site region 100477
Tssr106999 11 19019694 to 19019710 16 - TSS region transcription start site region 106999
Cpgi2607 11 19020359 to 19021165 806 CpG island CpG island 2607
Cpgi2608 11 19026554 to 19027687 1133 CpG island CpG island 2608
Tssr107000 11 19056129 to 19056134 5 - TSS region transcription start site region 107000
4933406G16Rik 11 19065276 to 19075740 10464 + lincRNA gene RIKEN cDNA 4933406G16 gene
Cpgi2609 11 19094347 to 19094561 214 CpG island CpG island 2609
D11Ertd326e 11 19116220 to 19116424 204 DNA segment DNA segment, Chr 11, ERATO Doi 326, expressed
Gm37439 11 19116579 to 19117434 855 - unclassified gene predicted gene, 37439
Nidd6k 11 19174204 to 97007000 77832796 QTL Nidd6 on KK-A
D11Mit170 11 19174204 to 19174319 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 170
Gm12025 11 19360926 to 19361069 143 - pseudogene predicted gene 12025
Gm12026 11 19383685 to 19384708 1023 + pseudogene predicted gene 12026
D11Mit295 11 19572315 to 19572430 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 295
Tssr100478 11 19582828 to 19582834 6 + TSS region transcription start site region 100478
Gm39601 11 19613814 to 19618743 4929 - lncRNA gene predicted gene, 39601
Gm12027 11 19626761 to 19628061 1300 - lincRNA gene predicted gene 12027
D11Hjk21 11 19651198 to 19651496 298 DNA segment DNA segment, Chr 11, H. Jockusch 21
Gm23386 11 19693155 to 19693298 143 - snoRNA gene predicted gene, 23386
Cpgi2610 11 19713698 to 19713987 289 CpG island CpG island 2610
D11Nds14 11 19719780 to 19719964 184 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 14
Tssr100479 11 19720213 to 19720219 6 + TSS region transcription start site region 100479
Cocrb11 11 19720355 to 19721472 1117 QTL cocaine related behavior 11
Glns-ps1 11 19720355 to 19721472 1117 + pseudogene glutamine synthetase pseudogene 1
Gm39602 11 19725864 to 19742707 16843 - lncRNA gene predicted gene, 39602
D11Mit79 11 19745817 to 19745966 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 79
Gm12028 11 19749419 to 19750066 647 - pseudogene predicted gene 12028
D11Hjk22 11 19751344 to 19751728 384 DNA segment DNA segment, Chr 11, H. Jockusch 22
Gm12029 11 19783652 to 19784483 831 + pseudogene predicted gene 12029