Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:17183221-18724059

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp3r1 11 17159298 to 17200380 41082 + protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
Tssr106981 11 17198509 to 17198559 50 - TSS region transcription start site region 106981
Tssr100455 11 17198556 to 17198579 23 + TSS region transcription start site region 100455
Tssr100456 11 17199399 to 17199403 4 + TSS region transcription start site region 100456
Tssr100457 11 17200259 to 17200266 7 + TSS region transcription start site region 100457
Pno1 11 17203198 to 17211568 8370 - protein coding gene partner of NOB1 homolog
Cpgi2596 11 17211235 to 17212189 954 CpG island CpG island 2596
Tssr106982 11 17211504 to 17211573 69 - TSS region transcription start site region 106982
Tssr106983 11 17211576 to 17211590 14 - TSS region transcription start site region 106983
Tssr100458 11 17211877 to 17211886 9 + TSS region transcription start site region 100458
Wdr92 11 17211893 to 17235200 23307 + protein coding gene WD repeat domain 92
Tssr100459 11 17211896 to 17211908 12 + TSS region transcription start site region 100459
Tssr100460 11 17211912 to 17211964 52 + TSS region transcription start site region 100460
Tssr100461 11 17221286 to 17221305 19 + TSS region transcription start site region 100461
Tssr100462 11 17221353 to 17221378 25 + TSS region transcription start site region 100462
Tssr100463 11 17221423 to 17221453 30 + TSS region transcription start site region 100463
Tssr100464 11 17248168 to 17248177 9 + TSS region transcription start site region 100464
Cpgi2597 11 17257478 to 17258030 552 CpG island CpG island 2597
Tssr100465 11 17257558 to 17257637 79 + TSS region transcription start site region 100465
C1d 11 17257618 to 17269176 11558 + protein coding gene C1D nuclear receptor co-repressor
D11Mit227 11 17277052 to 17277232 180 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 227
Hbnr15 11 17277052 to 17277232 180 QTL Heligmosomoides bakeri nematode resistance 15
Gm12015 11 17297577 to 17298419 842 - pseudogene predicted gene 12015
Gm31268 11 17324943 to 17354794 29851 + lncRNA gene predicted gene, 31268
Tssr100466 11 17324949 to 17324965 16 + TSS region transcription start site region 100466
Tssr100467 11 17324967 to 17324990 23 + TSS region transcription start site region 100467
Tssr100468 11 17325075 to 17325081 6 + TSS region transcription start site region 100468
D11Mit305 11 17368230 to 17368342 112 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 305
Tssr100469 11 17460156 to 17460165 9 + TSS region transcription start site region 100469
Tssr3433 11 17487200 to 17487207 7 + TSS region transcription start site region 3433
Gm18816 11 17529799 to 17530362 563 - pseudogene predicted gene, 18816
Gm23959 11 17548286 to 17548609 323 + unclassified non-coding RNA gene predicted gene, 23959
Gm12016 11 17638503 to 17639183 680 - pseudogene predicted gene 12016
Eae6 11 17831966 to 68609504 50777538 QTL experimental allergic encephalomyelitis susceptibility 6
D11Mit77 11 17831966 to 17832118 152 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 77
Tssr100470 11 17905940 to 17905942 2 + TSS region transcription start site region 100470
Tssr100471 11 17913678 to 17913685 7 + TSS region transcription start site region 100471
Etaa1 11 17938756 to 17953875 15119 - protein coding gene Ewing tumor-associated antigen 1
D11Mit78 11 17944331 to 17944433 102 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 78
Cpgi2598 11 17953221 to 17954059 838 CpG island CpG island 2598
Tssr100472 11 17953492 to 17953514 22 + TSS region transcription start site region 100472
Tssr106984 11 17953861 to 17953897 36 - TSS region transcription start site region 106984
Tssr100473 11 17953968 to 17953980 12 + TSS region transcription start site region 100473
Etaa1os 11 17953970 to 17959578 5608 + antisense lncRNA gene Ewing tumor-associated antigen 1, opposite strand
Tssr100474 11 17953984 to 17954031 47 + TSS region transcription start site region 100474
Gm12017 11 17973788 to 17974790 1002 - pseudogene predicted gene 12017
D11Mit228 11 17999286 to 17999420 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 228
Gm31505 11 17999675 to 18005178 5503 + lncRNA gene predicted gene, 31505
Gm12018 11 18095986 to 18103384 7398 + lincRNA gene predicted gene 12018
Gm12019 11 18206413 to 18206944 531 - pseudogene predicted gene 12019
Tssr100475 11 18212202 to 18212205 3 + TSS region transcription start site region 100475
D11Mit162 11 18246470 to 18246593 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 162
Gm12020 11 18325636 to 18327671 2035 - pseudogene predicted gene 12020
Tssr106985 11 18327044 to 18327067 23 - TSS region transcription start site region 106985
Tssr106986 11 18327256 to 18327259 3 - TSS region transcription start site region 106986
Gm37869 11 18436242 to 18436836 594 + unclassified gene predicted gene, 37869
Gm12022 11 18468403 to 18493277 24874 - lincRNA gene predicted gene 12022
Gm12021 11 18508040 to 18509940 1900 - pseudogene predicted gene 12021
Gm12024 11 18577234 to 18578482 1248 - pseudogene predicted gene 12024
Gm12023 11 18595248 to 18710222 114974 - lincRNA gene predicted gene 12023