Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:16999949-17649965

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plek 11 16971206 to 17008718 37512 - protein coding gene pleckstrin
Tssr106975 11 17000388 to 17000400 12 - TSS region transcription start site region 106975
Tssr106976 11 17002928 to 17002951 23 - TSS region transcription start site region 106976
Tssr106977 11 17008647 to 17008687 40 - TSS region transcription start site region 106977
Gm12014 11 17017867 to 17020209 2342 + pseudogene predicted gene 12014
Tssr106978 11 17044334 to 17044337 3 - TSS region transcription start site region 106978
Tssr100443 11 17051601 to 17051625 24 + TSS region transcription start site region 100443
Tssr100444 11 17051626 to 17051651 25 + TSS region transcription start site region 100444
Tssr100445 11 17051654 to 17051674 20 + TSS region transcription start site region 100445
Cpgi2594 11 17051759 to 17052385 626 CpG island CpG island 2594
Tssr100446 11 17051792 to 17051808 16 + TSS region transcription start site region 100446
Tssr100447 11 17051823 to 17051899 76 + TSS region transcription start site region 100447
Tssr100448 11 17051926 to 17051974 48 + TSS region transcription start site region 100448
Cnrip1 11 17051934 to 17079372 27438 + protein coding gene cannabinoid receptor interacting protein 1
Tssr100449 11 17051976 to 17051996 20 + TSS region transcription start site region 100449
Tssr100450 11 17052144 to 17052151 7 + TSS region transcription start site region 100450
Tssr106979 11 17052344 to 17052363 19 - TSS region transcription start site region 106979
Tssr100451 11 17054690 to 17054697 7 + TSS region transcription start site region 100451
Gm12013 11 17095490 to 17095644 154 - pseudogene predicted gene 12013
Tssr106980 11 17095692 to 17095703 11 - TSS region transcription start site region 106980
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
D11Mit63 11 17106175 to 17106313 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 63
Cpgi2595 11 17158797 to 17160177 1380 CpG island CpG island 2595
Tssr100452 11 17159274 to 17159357 83 + TSS region transcription start site region 100452
Ppp3r1 11 17159298 to 17200380 41082 + protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
Tssr100453 11 17159409 to 17159427 18 + TSS region transcription start site region 100453
Tssr100454 11 17159436 to 17159456 20 + TSS region transcription start site region 100454
Tssr106981 11 17198509 to 17198559 50 - TSS region transcription start site region 106981
Tssr100455 11 17198556 to 17198579 23 + TSS region transcription start site region 100455
Tssr100456 11 17199399 to 17199403 4 + TSS region transcription start site region 100456
Tssr100457 11 17200259 to 17200266 7 + TSS region transcription start site region 100457
Pno1 11 17203198 to 17211568 8370 - protein coding gene partner of NOB1 homolog
Cpgi2596 11 17211235 to 17212189 954 CpG island CpG island 2596
Tssr106982 11 17211504 to 17211573 69 - TSS region transcription start site region 106982
Tssr106983 11 17211576 to 17211590 14 - TSS region transcription start site region 106983
Tssr100458 11 17211877 to 17211886 9 + TSS region transcription start site region 100458
Wdr92 11 17211893 to 17235200 23307 + protein coding gene WD repeat domain 92
Tssr100459 11 17211896 to 17211908 12 + TSS region transcription start site region 100459
Tssr100460 11 17211912 to 17211964 52 + TSS region transcription start site region 100460
Tssr100461 11 17221286 to 17221305 19 + TSS region transcription start site region 100461
Tssr100462 11 17221353 to 17221378 25 + TSS region transcription start site region 100462
Tssr100463 11 17221423 to 17221453 30 + TSS region transcription start site region 100463
Tssr100464 11 17248168 to 17248177 9 + TSS region transcription start site region 100464
Cpgi2597 11 17257478 to 17258030 552 CpG island CpG island 2597
Tssr100465 11 17257558 to 17257637 79 + TSS region transcription start site region 100465
C1d 11 17257618 to 17269176 11558 + protein coding gene C1D nuclear receptor co-repressor
D11Mit227 11 17277052 to 17277232 180 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 227
Hbnr15 11 17277052 to 17277232 180 QTL Heligmosomoides bakeri nematode resistance 15
Gm12015 11 17297577 to 17298419 842 - pseudogene predicted gene 12015
Gm31268 11 17324943 to 17354794 29851 + lncRNA gene predicted gene, 31268
Tssr100466 11 17324949 to 17324965 16 + TSS region transcription start site region 100466
Tssr100467 11 17324967 to 17324990 23 + TSS region transcription start site region 100467
Tssr100468 11 17325075 to 17325081 6 + TSS region transcription start site region 100468
D11Mit305 11 17368230 to 17368342 112 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 305
Tssr100469 11 17460156 to 17460165 9 + TSS region transcription start site region 100469
Tssr3433 11 17487200 to 17487207 7 + TSS region transcription start site region 3433
Gm18816 11 17529799 to 17530362 563 - pseudogene predicted gene, 18816
Gm23959 11 17548286 to 17548609 323 + unclassified non-coding RNA gene predicted gene, 23959
Gm12016 11 17638503 to 17639183 680 - pseudogene predicted gene 12016