Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:16571324-17121327

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr106940 11 16591511 to 16591530 19 - TSS region transcription start site region 106940
Tssr106941 11 16591668 to 16591674 6 - TSS region transcription start site region 106941
Tssr106942 11 16592894 to 16592897 3 - TSS region transcription start site region 106942
Gm12663 11 16635109 to 16636066 957 - pseudogene predicted gene 12663
Tssr106943 11 16636128 to 16636141 13 - TSS region transcription start site region 106943
Gm12664 11 16643009 to 16643921 912 - pseudogene predicted gene 12664
Gm24714 11 16645438 to 16645538 100 - miRNA gene predicted gene, 24714
D11Mit75 11 16648403 to 16648528 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 75
Gm39583 11 16687946 to 16742258 54312 - lncRNA gene predicted gene, 39583
Gm25698 11 16732605 to 16732711 106 - snRNA gene predicted gene, 25698
Tssr106944 11 16742244 to 16742280 36 - TSS region transcription start site region 106944
Cpgi2592 11 16751955 to 16753433 1478 CpG island CpG island 2592
Tssr3432 11 16752197 to 16752202 5 + TSS region transcription start site region 3432
Tssr100407 11 16752203 to 16752215 12 + TSS region transcription start site region 100407
Egfr 11 16752203 to 16913907 161704 + protein coding gene epidermal growth factor receptor
Tssr100408 11 16752220 to 16752236 16 + TSS region transcription start site region 100408
Tssr100409 11 16752245 to 16752265 20 + TSS region transcription start site region 100409
Tssr100410 11 16753320 to 16753333 13 + TSS region transcription start site region 100410
Tssr100411 11 16758911 to 16758916 5 + TSS region transcription start site region 100411
Tssr100412 11 16759513 to 16759524 11 + TSS region transcription start site region 100412
Tssr100413 11 16759586 to 16759610 24 + TSS region transcription start site region 100413
Tssr100414 11 16759613 to 16759639 26 + TSS region transcription start site region 100414
Tssr100415 11 16778000 to 16778033 33 + TSS region transcription start site region 100415
Tssr100416 11 16778146 to 16778148 2 + TSS region transcription start site region 100416
Tssr100417 11 16778600 to 16778612 12 + TSS region transcription start site region 100417
Tssr100418 11 16778653 to 16778692 39 + TSS region transcription start site region 100418
Tssr106945 11 16779551 to 16779561 10 - TSS region transcription start site region 106945
Gm39584 11 16782393 to 16793633 11240 - lncRNA gene predicted gene, 39584
Tssr100419 11 16786077 to 16786086 9 + TSS region transcription start site region 100419
Tssr106946 11 16791301 to 16791319 18 - TSS region transcription start site region 106946
Tssr100420 11 16804413 to 16804424 11 + TSS region transcription start site region 100420
Tssr100421 11 16805637 to 16805647 10 + TSS region transcription start site region 100421
Tssr100422 11 16810904 to 16810915 11 + TSS region transcription start site region 100422
Tssr100423 11 16815403 to 16815407 4 + TSS region transcription start site region 100423
Egfros 11 16815431 to 16830702 15271 - antisense lncRNA gene epidermal growth factor receptor, opposite strand
Tssr100424 11 16822827 to 16822834 7 + TSS region transcription start site region 100424
Tssr100425 11 16842410 to 16842421 11 + TSS region transcription start site region 100425
Tssr100426 11 16846324 to 16846327 3 + TSS region transcription start site region 100426
Tssr100427 11 16846354 to 16846389 35 + TSS region transcription start site region 100427
Tssr100428 11 16870455 to 16870463 8 + TSS region transcription start site region 100428
Tssr100429 11 16871017 to 16871024 7 + TSS region transcription start site region 100429
Tssr100430 11 16871800 to 16871816 16 + TSS region transcription start site region 100430
Tssr100431 11 16901830 to 16901835 5 + TSS region transcription start site region 100431
Tssr100432 11 16905341 to 16905349 8 + TSS region transcription start site region 100432
Tssr100433 11 16912447 to 16912462 15 + TSS region transcription start site region 100433
Tssr106947 11 16912726 to 16912732 6 - TSS region transcription start site region 106947
Tssr100434 11 16914240 to 16914250 10 + TSS region transcription start site region 100434
Tssr100435 11 16914597 to 16914620 23 + TSS region transcription start site region 100435
Tssr100436 11 16914739 to 16914743 4 + TSS region transcription start site region 100436
Tssr100437 11 16915225 to 16915300 75 + TSS region transcription start site region 100437
Tssr100438 11 16915356 to 16915359 3 + TSS region transcription start site region 100438
Tssr100439 11 16916065 to 16916109 44 + TSS region transcription start site region 100439
Tssr100440 11 16917215 to 16917235 20 + TSS region transcription start site region 100440
Eldr 11 16935154 to 16951282 16128 - lncRNA gene Egfr long non-coding downstream RNA
Cpgi2593 11 16951083 to 16951789 706 CpG island CpG island 2593
Tssr106948 11 16951083 to 16951131 48 - TSS region transcription start site region 106948
Tssr100441 11 16951371 to 16951417 46 + TSS region transcription start site region 100441
Fbxo48 11 16951375 to 16954772 3397 + protein coding gene F-box protein 48
Tssr100442 11 16951440 to 16951468 28 + TSS region transcription start site region 100442
6230414M07Rik 11 16958788 to 16960036 1248 unclassified gene RIKEN cDNA 6230414M07 gene
Plek 11 16971206 to 17008718 37512 - protein coding gene pleckstrin
Tssr106949 11 16972228 to 16972250 22 - TSS region transcription start site region 106949
Tssr106950 11 16972253 to 16972274 21 - TSS region transcription start site region 106950
Tssr106951 11 16972754 to 16972827 73 - TSS region transcription start site region 106951
Tssr106952 11 16972831 to 16972854 23 - TSS region transcription start site region 106952
Tssr106953 11 16972879 to 16972919 40 - TSS region transcription start site region 106953
Tssr106954 11 16972923 to 16973000 77 - TSS region transcription start site region 106954
Tssr106955 11 16973159 to 16973177 18 - TSS region transcription start site region 106955
Tssr106956 11 16973211 to 16973244 33 - TSS region transcription start site region 106956
Tssr106957 11 16973255 to 16973302 47 - TSS region transcription start site region 106957
Tssr106958 11 16973439 to 16973499 60 - TSS region transcription start site region 106958
Tssr106959 11 16973926 to 16973988 62 - TSS region transcription start site region 106959
Tssr106960 11 16974003 to 16974017 14 - TSS region transcription start site region 106960
Tssr106961 11 16974024 to 16974097 73 - TSS region transcription start site region 106961
Tssr106962 11 16974108 to 16974132 24 - TSS region transcription start site region 106962
Tssr106963 11 16981826 to 16981840 14 - TSS region transcription start site region 106963
Tssr106964 11 16981848 to 16981933 85 - TSS region transcription start site region 106964
Tssr106965 11 16983220 to 16983269 49 - TSS region transcription start site region 106965
Tssr106966 11 16984041 to 16984068 27 - TSS region transcription start site region 106966
Tssr106967 11 16985347 to 16985387 40 - TSS region transcription start site region 106967
Tssr106968 11 16990135 to 16990189 54 - TSS region transcription start site region 106968
Tssr106969 11 16992966 to 16992981 15 - TSS region transcription start site region 106969
Tssr106970 11 16994737 to 16994776 39 - TSS region transcription start site region 106970
Tssr106971 11 16995231 to 16995266 35 - TSS region transcription start site region 106971
Tssr106972 11 16995311 to 16995327 16 - TSS region transcription start site region 106972
Tssr106973 11 16995332 to 16995359 27 - TSS region transcription start site region 106973
Tssr106974 11 16999722 to 16999726 4 - TSS region transcription start site region 106974
Tssr106975 11 17000388 to 17000400 12 - TSS region transcription start site region 106975
Tssr106976 11 17002928 to 17002951 23 - TSS region transcription start site region 106976
Tssr106977 11 17008647 to 17008687 40 - TSS region transcription start site region 106977
Gm12014 11 17017867 to 17020209 2342 + pseudogene predicted gene 12014
Tssr106978 11 17044334 to 17044337 3 - TSS region transcription start site region 106978
Tssr100443 11 17051601 to 17051625 24 + TSS region transcription start site region 100443
Tssr100444 11 17051626 to 17051651 25 + TSS region transcription start site region 100444
Tssr100445 11 17051654 to 17051674 20 + TSS region transcription start site region 100445
Cpgi2594 11 17051759 to 17052385 626 CpG island CpG island 2594
Tssr100446 11 17051792 to 17051808 16 + TSS region transcription start site region 100446
Tssr100447 11 17051823 to 17051899 76 + TSS region transcription start site region 100447
Tssr100448 11 17051926 to 17051974 48 + TSS region transcription start site region 100448
Cnrip1 11 17051934 to 17079372 27438 + protein coding gene cannabinoid receptor interacting protein 1
Tssr100449 11 17051976 to 17051996 20 + TSS region transcription start site region 100449
Tssr100450 11 17052144 to 17052151 7 + TSS region transcription start site region 100450
Tssr106979 11 17052344 to 17052363 19 - TSS region transcription start site region 106979
Tssr100451 11 17054690 to 17054697 7 + TSS region transcription start site region 100451
Gm12013 11 17095490 to 17095644 154 - pseudogene predicted gene 12013
Tssr106980 11 17095692 to 17095703 11 - TSS region transcription start site region 106980
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
D11Mit63 11 17106175 to 17106313 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 63