Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:16219597-17609620

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12011 11 16236929 to 16237546 617 + pseudogene predicted gene 12011
Cpgi2589 11 16257160 to 16258100 940 CpG island CpG island 2589
Vstm2a 11 16257357 to 16284551 27194 + protein coding gene V-set and transmembrane domain containing 2A
Tssr100401 11 16257634 to 16257649 15 + TSS region transcription start site region 100401
Tssr100402 11 16257659 to 16257672 13 + TSS region transcription start site region 100402
Tssr100403 11 16257706 to 16257808 102 + TSS region transcription start site region 100403
Tssr100404 11 16257867 to 16257878 11 + TSS region transcription start site region 100404
Tssr100405 11 16260585 to 16260607 22 + TSS region transcription start site region 100405
Cpgi2590 11 16260669 to 16261470 801 CpG island CpG island 2590
Gm12012 11 16439254 to 16440319 1065 + pseudogene predicted gene 12012
Sec61g 11 16501638 to 16508484 6846 - protein coding gene SEC61, gamma subunit
Cpgi2591 11 16507759 to 16508568 809 CpG island CpG island 2591
Tssr106937 11 16508098 to 16508139 41 - TSS region transcription start site region 106937
Tssr106938 11 16508149 to 16508187 38 - TSS region transcription start site region 106938
Tssr106939 11 16508487 to 16508507 20 - TSS region transcription start site region 106939
Akt2-ps 11 16514533 to 16515981 1448 + pseudogene thymoma viral proto-oncogene 2, pseudogene
Tssr100406 11 16526107 to 16526113 6 + TSS region transcription start site region 100406
Tssr106940 11 16591511 to 16591530 19 - TSS region transcription start site region 106940
Tssr106941 11 16591668 to 16591674 6 - TSS region transcription start site region 106941
Tssr106942 11 16592894 to 16592897 3 - TSS region transcription start site region 106942
Gm12663 11 16635109 to 16636066 957 - pseudogene predicted gene 12663
Tssr106943 11 16636128 to 16636141 13 - TSS region transcription start site region 106943
Gm12664 11 16643009 to 16643921 912 - pseudogene predicted gene 12664
Gm24714 11 16645438 to 16645538 100 - miRNA gene predicted gene, 24714
D11Mit75 11 16648403 to 16648528 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 75
Gm39583 11 16687946 to 16742258 54312 - lncRNA gene predicted gene, 39583
Gm25698 11 16732605 to 16732711 106 - snRNA gene predicted gene, 25698
Tssr106944 11 16742244 to 16742280 36 - TSS region transcription start site region 106944
Cpgi2592 11 16751955 to 16753433 1478 CpG island CpG island 2592
Tssr3432 11 16752197 to 16752202 5 + TSS region transcription start site region 3432
Tssr100407 11 16752203 to 16752215 12 + TSS region transcription start site region 100407
Egfr 11 16752203 to 16913907 161704 + protein coding gene epidermal growth factor receptor
Tssr100408 11 16752220 to 16752236 16 + TSS region transcription start site region 100408
Tssr100409 11 16752245 to 16752265 20 + TSS region transcription start site region 100409
Tssr100410 11 16753320 to 16753333 13 + TSS region transcription start site region 100410
Tssr100411 11 16758911 to 16758916 5 + TSS region transcription start site region 100411
Tssr100412 11 16759513 to 16759524 11 + TSS region transcription start site region 100412
Tssr100413 11 16759586 to 16759610 24 + TSS region transcription start site region 100413
Tssr100414 11 16759613 to 16759639 26 + TSS region transcription start site region 100414
Tssr100415 11 16778000 to 16778033 33 + TSS region transcription start site region 100415
Tssr100416 11 16778146 to 16778148 2 + TSS region transcription start site region 100416
Tssr100417 11 16778600 to 16778612 12 + TSS region transcription start site region 100417
Tssr100418 11 16778653 to 16778692 39 + TSS region transcription start site region 100418
Tssr106945 11 16779551 to 16779561 10 - TSS region transcription start site region 106945
Gm39584 11 16782393 to 16793633 11240 - lncRNA gene predicted gene, 39584
Tssr100419 11 16786077 to 16786086 9 + TSS region transcription start site region 100419
Tssr106946 11 16791301 to 16791319 18 - TSS region transcription start site region 106946
Tssr100420 11 16804413 to 16804424 11 + TSS region transcription start site region 100420
Tssr100421 11 16805637 to 16805647 10 + TSS region transcription start site region 100421
Tssr100422 11 16810904 to 16810915 11 + TSS region transcription start site region 100422
Tssr100423 11 16815403 to 16815407 4 + TSS region transcription start site region 100423
Egfros 11 16815431 to 16830702 15271 - antisense lncRNA gene epidermal growth factor receptor, opposite strand
Tssr100424 11 16822827 to 16822834 7 + TSS region transcription start site region 100424
Tssr100425 11 16842410 to 16842421 11 + TSS region transcription start site region 100425
Tssr100426 11 16846324 to 16846327 3 + TSS region transcription start site region 100426
Tssr100427 11 16846354 to 16846389 35 + TSS region transcription start site region 100427
Tssr100428 11 16870455 to 16870463 8 + TSS region transcription start site region 100428
Tssr100429 11 16871017 to 16871024 7 + TSS region transcription start site region 100429
Tssr100430 11 16871800 to 16871816 16 + TSS region transcription start site region 100430
Tssr100431 11 16901830 to 16901835 5 + TSS region transcription start site region 100431
Tssr100432 11 16905341 to 16905349 8 + TSS region transcription start site region 100432
Tssr100433 11 16912447 to 16912462 15 + TSS region transcription start site region 100433
Tssr106947 11 16912726 to 16912732 6 - TSS region transcription start site region 106947
Tssr100434 11 16914240 to 16914250 10 + TSS region transcription start site region 100434
Tssr100435 11 16914597 to 16914620 23 + TSS region transcription start site region 100435
Tssr100436 11 16914739 to 16914743 4 + TSS region transcription start site region 100436
Tssr100437 11 16915225 to 16915300 75 + TSS region transcription start site region 100437
Tssr100438 11 16915356 to 16915359 3 + TSS region transcription start site region 100438
Tssr100439 11 16916065 to 16916109 44 + TSS region transcription start site region 100439
Tssr100440 11 16917215 to 16917235 20 + TSS region transcription start site region 100440
Eldr 11 16935154 to 16951282 16128 - lncRNA gene Egfr long non-coding downstream RNA
Tssr106948 11 16951083 to 16951131 48 - TSS region transcription start site region 106948
Cpgi2593 11 16951083 to 16951789 706 CpG island CpG island 2593
Tssr100441 11 16951371 to 16951417 46 + TSS region transcription start site region 100441
Fbxo48 11 16951375 to 16954772 3397 + protein coding gene F-box protein 48
Tssr100442 11 16951440 to 16951468 28 + TSS region transcription start site region 100442
6230414M07Rik 11 16958788 to 16960036 1248 unclassified gene RIKEN cDNA 6230414M07 gene
Plek 11 16971206 to 17008718 37512 - protein coding gene pleckstrin
Tssr106949 11 16972228 to 16972250 22 - TSS region transcription start site region 106949
Tssr106950 11 16972253 to 16972274 21 - TSS region transcription start site region 106950
Tssr106951 11 16972754 to 16972827 73 - TSS region transcription start site region 106951
Tssr106952 11 16972831 to 16972854 23 - TSS region transcription start site region 106952
Tssr106953 11 16972879 to 16972919 40 - TSS region transcription start site region 106953
Tssr106954 11 16972923 to 16973000 77 - TSS region transcription start site region 106954
Tssr106955 11 16973159 to 16973177 18 - TSS region transcription start site region 106955
Tssr106956 11 16973211 to 16973244 33 - TSS region transcription start site region 106956
Tssr106957 11 16973255 to 16973302 47 - TSS region transcription start site region 106957
Tssr106958 11 16973439 to 16973499 60 - TSS region transcription start site region 106958
Tssr106959 11 16973926 to 16973988 62 - TSS region transcription start site region 106959
Tssr106960 11 16974003 to 16974017 14 - TSS region transcription start site region 106960
Tssr106961 11 16974024 to 16974097 73 - TSS region transcription start site region 106961
Tssr106962 11 16974108 to 16974132 24 - TSS region transcription start site region 106962
Tssr106963 11 16981826 to 16981840 14 - TSS region transcription start site region 106963
Tssr106964 11 16981848 to 16981933 85 - TSS region transcription start site region 106964
Tssr106965 11 16983220 to 16983269 49 - TSS region transcription start site region 106965
Tssr106966 11 16984041 to 16984068 27 - TSS region transcription start site region 106966
Tssr106967 11 16985347 to 16985387 40 - TSS region transcription start site region 106967
Tssr106968 11 16990135 to 16990189 54 - TSS region transcription start site region 106968
Tssr106969 11 16992966 to 16992981 15 - TSS region transcription start site region 106969
Tssr106970 11 16994737 to 16994776 39 - TSS region transcription start site region 106970
Tssr106971 11 16995231 to 16995266 35 - TSS region transcription start site region 106971
Tssr106972 11 16995311 to 16995327 16 - TSS region transcription start site region 106972
Tssr106973 11 16995332 to 16995359 27 - TSS region transcription start site region 106973
Tssr106974 11 16999722 to 16999726 4 - TSS region transcription start site region 106974
Tssr106975 11 17000388 to 17000400 12 - TSS region transcription start site region 106975
Tssr106976 11 17002928 to 17002951 23 - TSS region transcription start site region 106976
Tssr106977 11 17008647 to 17008687 40 - TSS region transcription start site region 106977
Gm12014 11 17017867 to 17020209 2342 + pseudogene predicted gene 12014
Tssr106978 11 17044334 to 17044337 3 - TSS region transcription start site region 106978
Tssr100443 11 17051601 to 17051625 24 + TSS region transcription start site region 100443
Tssr100444 11 17051626 to 17051651 25 + TSS region transcription start site region 100444
Tssr100445 11 17051654 to 17051674 20 + TSS region transcription start site region 100445
Cpgi2594 11 17051759 to 17052385 626 CpG island CpG island 2594
Tssr100446 11 17051792 to 17051808 16 + TSS region transcription start site region 100446
Tssr100447 11 17051823 to 17051899 76 + TSS region transcription start site region 100447
Tssr100448 11 17051926 to 17051974 48 + TSS region transcription start site region 100448
Cnrip1 11 17051934 to 17079372 27438 + protein coding gene cannabinoid receptor interacting protein 1
Tssr100449 11 17051976 to 17051996 20 + TSS region transcription start site region 100449
Tssr100450 11 17052144 to 17052151 7 + TSS region transcription start site region 100450
Tssr106979 11 17052344 to 17052363 19 - TSS region transcription start site region 106979
Tssr100451 11 17054690 to 17054697 7 + TSS region transcription start site region 100451
Gm12013 11 17095490 to 17095644 154 - pseudogene predicted gene 12013
Tssr106980 11 17095692 to 17095703 11 - TSS region transcription start site region 106980
D11Mit63 11 17106175 to 17106313 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 63
Orgwq8 11 17106175 to 67187585 50081410 QTL organ weight QTL 8
Cpgi2595 11 17158797 to 17160177 1380 CpG island CpG island 2595
Tssr100452 11 17159274 to 17159357 83 + TSS region transcription start site region 100452
Ppp3r1 11 17159298 to 17200380 41082 + protein coding gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
Tssr100453 11 17159409 to 17159427 18 + TSS region transcription start site region 100453
Tssr100454 11 17159436 to 17159456 20 + TSS region transcription start site region 100454
Tssr106981 11 17198509 to 17198559 50 - TSS region transcription start site region 106981
Tssr100455 11 17198556 to 17198579 23 + TSS region transcription start site region 100455
Tssr100456 11 17199399 to 17199403 4 + TSS region transcription start site region 100456
Tssr100457 11 17200259 to 17200266 7 + TSS region transcription start site region 100457
Pno1 11 17203198 to 17211568 8370 - protein coding gene partner of NOB1 homolog
Cpgi2596 11 17211235 to 17212189 954 CpG island CpG island 2596
Tssr106982 11 17211504 to 17211573 69 - TSS region transcription start site region 106982
Tssr106983 11 17211576 to 17211590 14 - TSS region transcription start site region 106983
Tssr100458 11 17211877 to 17211886 9 + TSS region transcription start site region 100458
Wdr92 11 17211893 to 17235200 23307 + protein coding gene WD repeat domain 92
Tssr100459 11 17211896 to 17211908 12 + TSS region transcription start site region 100459
Tssr100460 11 17211912 to 17211964 52 + TSS region transcription start site region 100460
Tssr100461 11 17221286 to 17221305 19 + TSS region transcription start site region 100461
Tssr100462 11 17221353 to 17221378 25 + TSS region transcription start site region 100462
Tssr100463 11 17221423 to 17221453 30 + TSS region transcription start site region 100463
Tssr100464 11 17248168 to 17248177 9 + TSS region transcription start site region 100464
Cpgi2597 11 17257478 to 17258030 552 CpG island CpG island 2597
Tssr100465 11 17257558 to 17257637 79 + TSS region transcription start site region 100465
C1d 11 17257618 to 17269176 11558 + protein coding gene C1D nuclear receptor co-repressor
Hbnr15 11 17277052 to 17277232 180 QTL Heligmosomoides bakeri nematode resistance 15
D11Mit227 11 17277052 to 17277232 180 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 227
Gm12015 11 17297577 to 17298419 842 - pseudogene predicted gene 12015
Gm31268 11 17324943 to 17354794 29851 + lncRNA gene predicted gene, 31268
Tssr100466 11 17324949 to 17324965 16 + TSS region transcription start site region 100466
Tssr100467 11 17324967 to 17324990 23 + TSS region transcription start site region 100467
Tssr100468 11 17325075 to 17325081 6 + TSS region transcription start site region 100468
D11Mit305 11 17368230 to 17368342 112 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 305
Tssr100469 11 17460156 to 17460165 9 + TSS region transcription start site region 100469
Tssr3433 11 17487200 to 17487207 7 + TSS region transcription start site region 3433
Gm18816 11 17529799 to 17530362 563 - pseudogene predicted gene, 18816
Gm23959 11 17548286 to 17548609 323 + unclassified non-coding RNA gene predicted gene, 23959