Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:13439158-16660257

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Mit133 11 13452477 to 13452616 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 133
Gm30770 11 13941722 to 13955732 14010 - lncRNA gene predicted gene, 30770
4930554G24Rik 11 14072103 to 14179041 106938 - lincRNA gene RIKEN cDNA 4930554G24 gene
Tssr106932 11 14120419 to 14120425 6 - TSS region transcription start site region 106932
Tssr106933 11 14147704 to 14147712 8 - TSS region transcription start site region 106933
Tssr100397 11 14162055 to 14162066 11 + TSS region transcription start site region 100397
Gm12005 11 14162079 to 14162457 378 + pseudogene predicted gene 12005
Tssr106934 11 14179040 to 14179081 41 - TSS region transcription start site region 106934
Tssr100398 11 14186129 to 14186133 4 + TSS region transcription start site region 100398
Tssr106935 11 14448655 to 14448659 4 - TSS region transcription start site region 106935
Gm12006 11 14487613 to 14488015 402 + pseudogene predicted gene 12006
1700046C09Rik 11 14560355 to 14599225 38870 - lincRNA gene RIKEN cDNA 1700046C09 gene
Tssr106936 11 14599194 to 14599207 13 - TSS region transcription start site region 106936
Tssr100399 11 14599240 to 14599243 3 + TSS region transcription start site region 100399
Tssr100400 11 14599252 to 14599296 44 + TSS region transcription start site region 100400
Pom121l12 11 14599276 to 14600314 1038 + protein coding gene POM121 membrane glycoprotein-like 12
Tssr3431 11 14703490 to 14703492 2 + TSS region transcription start site region 3431
Gm12007 11 14722617 to 14723213 596 + pseudogene predicted gene 12007
Gm12008 11 14780027 to 14780781 754 + pseudogene predicted gene 12008
D11Mit148 11 14802448 to 14802592 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 148
Gm12009 11 15049158 to 15050257 1099 + pseudogene predicted gene 12009
Gm24707 11 15412300 to 15412406 106 + snRNA gene predicted gene, 24707
Gm25490 11 15452422 to 15452551 129 + snoRNA gene predicted gene, 25490
Gm12010 11 15482327 to 15489453 7126 + pseudogene predicted gene 12010
Gm37319 11 16037793 to 16038428 635 + unclassified gene predicted gene, 37319
Gm12011 11 16236929 to 16237546 617 + pseudogene predicted gene 12011
Cpgi2589 11 16257160 to 16258100 940 CpG island CpG island 2589
Vstm2a 11 16257357 to 16284551 27194 + protein coding gene V-set and transmembrane domain containing 2A
Tssr100401 11 16257634 to 16257649 15 + TSS region transcription start site region 100401
Tssr100402 11 16257659 to 16257672 13 + TSS region transcription start site region 100402
Tssr100403 11 16257706 to 16257808 102 + TSS region transcription start site region 100403
Tssr100404 11 16257867 to 16257878 11 + TSS region transcription start site region 100404
Tssr100405 11 16260585 to 16260607 22 + TSS region transcription start site region 100405
Cpgi2590 11 16260669 to 16261470 801 CpG island CpG island 2590
Gm12012 11 16439254 to 16440319 1065 + pseudogene predicted gene 12012
Sec61g 11 16501638 to 16508484 6846 - protein coding gene SEC61, gamma subunit
Cpgi2591 11 16507759 to 16508568 809 CpG island CpG island 2591
Tssr106937 11 16508098 to 16508139 41 - TSS region transcription start site region 106937
Tssr106938 11 16508149 to 16508187 38 - TSS region transcription start site region 106938
Tssr106939 11 16508487 to 16508507 20 - TSS region transcription start site region 106939
Akt2-ps 11 16514533 to 16515981 1448 + pseudogene thymoma viral proto-oncogene 2, pseudogene
Tssr100406 11 16526107 to 16526113 6 + TSS region transcription start site region 100406
Tssr106940 11 16591511 to 16591530 19 - TSS region transcription start site region 106940
Tssr106941 11 16591668 to 16591674 6 - TSS region transcription start site region 106941
Tssr106942 11 16592894 to 16592897 3 - TSS region transcription start site region 106942
Gm12663 11 16635109 to 16636066 957 - pseudogene predicted gene 12663
Tssr106943 11 16636128 to 16636141 13 - TSS region transcription start site region 106943
Gm12664 11 16643009 to 16643921 912 - pseudogene predicted gene 12664
Gm24714 11 16645438 to 16645538 100 - miRNA gene predicted gene, 24714
D11Mit75 11 16648403 to 16648528 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 75