Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:12272477-14632616

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cobl 11 12236676 to 12464960 228284 - protein coding gene cordon-bleu WH2 repeat
Tssr106921 11 12309732 to 12309746 14 - TSS region transcription start site region 106921
Tssr106922 11 12309760 to 12309771 11 - TSS region transcription start site region 106922
Gm12002 11 12313365 to 12346088 32723 + antisense lncRNA gene predicted gene 12002
Tssr100396 11 12314509 to 12314529 20 + TSS region transcription start site region 100396
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
D11Mit2 11 12318637 to 12318743 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Tssr106923 11 12354027 to 12354032 5 - TSS region transcription start site region 106923
Gm30596 11 12379434 to 12388976 9542 + lncRNA gene predicted gene, 30596
Tssr106924 11 12412136 to 12412153 17 - TSS region transcription start site region 106924
Tssr106925 11 12428969 to 12428991 22 - TSS region transcription start site region 106925
Tssr106926 11 12429015 to 12429028 13 - TSS region transcription start site region 106926
Cpgi2588 11 12464272 to 12465562 1290 CpG island CpG island 2588
Tssr106927 11 12464746 to 12464759 13 - TSS region transcription start site region 106927
Tssr106928 11 12464819 to 12464845 26 - TSS region transcription start site region 106928
Tssr106929 11 12464850 to 12464879 29 - TSS region transcription start site region 106929
Tssr106930 11 12464881 to 12464997 116 - TSS region transcription start site region 106930
Gm19314 11 12557219 to 12557644 425 - pseudogene predicted gene, 19314
Tssr106931 11 12557809 to 12557822 13 - TSS region transcription start site region 106931
D11Mit204 11 12610927 to 12611067 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 204
Gm22156 11 12676933 to 12677073 140 + snoRNA gene predicted gene, 22156
D11Mit150 11 12692718 to 12692908 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 150
Gm22789 11 12692813 to 12692942 129 + snoRNA gene predicted gene, 22789
Gm12003 11 12936834 to 12937938 1104 - pseudogene predicted gene 12003
Gm12004 11 12997666 to 12998380 714 + pseudogene predicted gene 12004
D11Mit133 11 13452477 to 13452616 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 133
Gm30770 11 13941722 to 13955732 14010 - lncRNA gene predicted gene, 30770
4930554G24Rik 11 14072103 to 14179041 106938 - lincRNA gene RIKEN cDNA 4930554G24 gene
Tssr106932 11 14120419 to 14120425 6 - TSS region transcription start site region 106932
Tssr106933 11 14147704 to 14147712 8 - TSS region transcription start site region 106933
Tssr100397 11 14162055 to 14162066 11 + TSS region transcription start site region 100397
Gm12005 11 14162079 to 14162457 378 + pseudogene predicted gene 12005
Tssr106934 11 14179040 to 14179081 41 - TSS region transcription start site region 106934
Tssr100398 11 14186129 to 14186133 4 + TSS region transcription start site region 100398
Tssr106935 11 14448655 to 14448659 4 - TSS region transcription start site region 106935
Gm12006 11 14487613 to 14488015 402 + pseudogene predicted gene 12006
1700046C09Rik 11 14560355 to 14599225 38870 - lincRNA gene RIKEN cDNA 1700046C09 gene
Tssr106936 11 14599194 to 14599207 13 - TSS region transcription start site region 106936
Tssr100399 11 14599240 to 14599243 3 + TSS region transcription start site region 100399
Tssr100400 11 14599252 to 14599296 44 + TSS region transcription start site region 100400
Pom121l12 11 14599276 to 14600314 1038 + protein coding gene POM121 membrane glycoprotein-like 12
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7