Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:121177564-122007572

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ogfod3 11 121177593 to 121204648 27055 - protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 3
Tssr112449 11 121196352 to 121196355 3 - TSS region transcription start site region 112449
Cpgi4339 11 121204113 to 121205030 917 CpG island CpG island 4339
Tssr106392 11 121204420 to 121204441 21 + TSS region transcription start site region 106392
Hexdc 11 121204433 to 121222655 18222 + protein coding gene hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
Tssr106393 11 121204443 to 121204497 54 + TSS region transcription start site region 106393
Tssr112450 11 121204626 to 121204717 91 - TSS region transcription start site region 112450
Tssr106394 11 121204754 to 121204781 27 + TSS region transcription start site region 106394
Tssr112451 11 121204930 to 121204977 47 - TSS region transcription start site region 112451
Cybc1 11 121222588 to 121229322 6734 - protein coding gene cytochrome b 245 chaperone 1
Cpgi4340 11 121228816 to 121229411 595 CpG island CpG island 4340
Tssr112452 11 121229038 to 121229103 65 - TSS region transcription start site region 112452
Tssr112453 11 121229226 to 121229292 66 - TSS region transcription start site region 112453
Tssr112454 11 121229293 to 121229314 21 - TSS region transcription start site region 112454
Cpgi4341 11 121236482 to 121237602 1120 CpG island CpG island 4341
Tssr106395 11 121237216 to 121237289 73 + TSS region transcription start site region 106395
Narf 11 121237253 to 121255856 18603 + protein coding gene nuclear prelamin A recognition factor
Tssr106396 11 121237305 to 121237317 12 + TSS region transcription start site region 106396
Tssr106397 11 121245363 to 121245407 44 + TSS region transcription start site region 106397
Cpgi4342 11 121259185 to 121261025 1840 CpG island CpG island 4342
Tssr106398 11 121259983 to 121260055 72 + TSS region transcription start site region 106398
Foxk2 11 121259990 to 121309896 49906 + protein coding gene forkhead box K2
Tssr106399 11 121260112 to 121260121 9 + TSS region transcription start site region 106399
Tssr106400 11 121261196 to 121261200 4 + TSS region transcription start site region 106400
Tssr106401 11 121287970 to 121287995 25 + TSS region transcription start site region 106401
Tssr106402 11 121308368 to 121308370 2 + TSS region transcription start site region 106402
Tssr112455 11 121325598 to 121325602 4 - TSS region transcription start site region 112455
Wdr45b 11 121327224 to 121354445 27221 - protein coding gene WD repeat domain 45B
D11Ertd712e 11 121330509 to 121330710 201 DNA segment DNA segment, Chr 11, ERATO Doi 712, expressed
Tssr112456 11 121333573 to 121333577 4 - TSS region transcription start site region 112456
Cpgi4343 11 121353635 to 121354889 1254 CpG island CpG island 4343
Tssr112457 11 121354337 to 121354436 99 - TSS region transcription start site region 112457
Tssr3762 11 121354613 to 121354626 13 + TSS region transcription start site region 3762
Rab40b 11 121356125 to 121388251 32126 - protein coding gene Rab40B, member RAS oncogene family
D11Dcr45 11 121373396 to 121373491 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 45
Mir7236 11 121387145 to 121387204 59 - miRNA gene microRNA 7236
Cpgi4344 11 121387529 to 121388522 993 CpG island CpG island 4344
Tssr112458 11 121388186 to 121388267 81 - TSS region transcription start site region 112458
Gm11866 11 121415092 to 121415426 334 - pseudogene predicted gene 11866
Cpgi4345 11 121421017 to 121421940 923 CpG island CpG island 4345
Tssr106403 11 121421388 to 121421469 81 + TSS region transcription start site region 106403
Fn3krp 11 121421401 to 121431288 9887 + protein coding gene fructosamine 3 kinase related protein
Cpgi4346 11 121434807 to 121435240 433 CpG island CpG island 4346
Fn3k 11 121434913 to 121450491 15578 + protein coding gene fructosamine 3 kinase
Tssr106404 11 121434948 to 121434987 39 + TSS region transcription start site region 106404
Cpgi4347 11 121451728 to 121452580 852 CpG island CpG island 4347
Tbcd 11 121451949 to 121617164 165215 + protein coding gene tubulin-specific chaperone d
Tssr106405 11 121451954 to 121451970 16 + TSS region transcription start site region 106405
Tssr106406 11 121451973 to 121452036 63 + TSS region transcription start site region 106406
D11Mit335 11 121454513 to 121454632 119 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 335
Tssr106407 11 121487963 to 121488004 41 + TSS region transcription start site region 106407
Zfp750 11 121510978 to 121519333 8355 - protein coding gene zinc finger protein 750
Tssr112459 11 121519280 to 121519295 15 - TSS region transcription start site region 112459
Tssr112460 11 121519297 to 121519311 14 - TSS region transcription start site region 112460
Tssr112461 11 121519326 to 121519341 15 - TSS region transcription start site region 112461
Tssr106408 11 121519420 to 121519436 16 + TSS region transcription start site region 106408
Tssr112462 11 121519773 to 121519794 21 - TSS region transcription start site region 112462
Tssr112463 11 121519801 to 121519810 9 - TSS region transcription start site region 112463
Tssr106409 11 121544197 to 121544221 24 + TSS region transcription start site region 106409
Tssr112464 11 121548062 to 121548097 35 - TSS region transcription start site region 112464
Tssr106410 11 121549845 to 121549856 11 + TSS region transcription start site region 106410
Tssr106411 11 121556219 to 121556223 4 + TSS region transcription start site region 106411
Tssr106412 11 121559749 to 121559761 12 + TSS region transcription start site region 106412
Tssr106413 11 121592564 to 121592572 8 + TSS region transcription start site region 106413
Tssr106414 11 121592593 to 121592613 20 + TSS region transcription start site region 106414
Tssr106415 11 121601693 to 121601710 17 + TSS region transcription start site region 106415
B3gntl1 11 121616197 to 121673153 56956 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
Gm18479 11 121663779 to 121664585 806 + pseudogene predicted gene, 18479
Cpgi4348 11 121672660 to 121673593 933 CpG island CpG island 4348
Tssr112465 11 121673069 to 121673102 33 - TSS region transcription start site region 112465
Tssr112466 11 121673103 to 121673146 43 - TSS region transcription start site region 112466
Tssr106416 11 121673448 to 121673464 16 + TSS region transcription start site region 106416
Metrnl 11 121701544 to 121716306 14762 + protein coding gene meteorin, glial cell differentiation regulator-like
Cpgi4349 11 121702045 to 121703752 1707 CpG island CpG island 4349
Tssr106417 11 121702393 to 121702404 11 + TSS region transcription start site region 106417
Tssr106418 11 121702418 to 121702434 16 + TSS region transcription start site region 106418
Tssr106419 11 121702453 to 121702467 14 + TSS region transcription start site region 106419
Tssr106420 11 121702528 to 121702539 11 + TSS region transcription start site region 106420
Tssr106421 11 121702575 to 121702586 11 + TSS region transcription start site region 106421
Tssr106422 11 121702591 to 121702616 25 + TSS region transcription start site region 106422
Tssr106423 11 121702756 to 121702766 10 + TSS region transcription start site region 106423
Tssr112467 11 121703303 to 121703311 8 - TSS region transcription start site region 112467
Tssr106424 11 121706594 to 121706604 10 + TSS region transcription start site region 106424
Tssr106425 11 121708680 to 121708682 2 + TSS region transcription start site region 106425
Tssr106426 11 121717095 to 121717132 37 + TSS region transcription start site region 106426
Tssr106427 11 121717176 to 121717184 8 + TSS region transcription start site region 106427
Tssr106428 11 121717314 to 121717330 16 + TSS region transcription start site region 106428
Tssr106429 11 121718508 to 121718526 18 + TSS region transcription start site region 106429
Tssr106430 11 121718537 to 121718560 23 + TSS region transcription start site region 106430
Tssr106431 11 121718576 to 121718601 25 + TSS region transcription start site region 106431
Tssr112468 11 121741578 to 121741602 24 - TSS region transcription start site region 112468
Tssr112469 11 121744067 to 121744092 25 - TSS region transcription start site region 112469
Tssr112470 11 121745656 to 121745685 29 - TSS region transcription start site region 112470
Tssr106432 11 121748543 to 121748552 9 + TSS region transcription start site region 106432
Gm30338 11 121794930 to 121797346 2416 + lncRNA gene predicted gene, 30338
Gm12589 11 121803107 to 121810319 7212 + lincRNA gene predicted gene 12589
Tssr106433 11 121805486 to 121805490 4 + TSS region transcription start site region 106433
Gm29513 11 121817408 to 121817609 201 + lincRNA gene predicted gene 29513
Gm15643 11 121829446 to 121830103 657 - antisense lncRNA gene predicted gene 15643
Cpgi4350 11 121830078 to 121831069 991 CpG island CpG island 4350
Tssr112471 11 121830141 to 121830150 9 - TSS region transcription start site region 112471
Tssr106434 11 121830193 to 121830198 5 + TSS region transcription start site region 106434
Tssr106435 11 121830215 to 121830224 9 + TSS region transcription start site region 106435
Tssr106436 11 121830231 to 121830250 19 + TSS region transcription start site region 106436
Ptchd3 11 121830247 to 121843423 13176 + protein coding gene patched domain containing 3
Tssr106437 11 121830254 to 121830279 25 + TSS region transcription start site region 106437
Tssr106438 11 121847034 to 121847038 4 + TSS region transcription start site region 106438
Gm12586 11 121856704 to 121858792 2088 + pseudogene predicted gene 12586
D11Mit1007 11 121870088 to 121870246 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1007
Gm12590 11 121882333 to 121883863 1530 - lincRNA gene predicted gene 12590
Gm12587 11 121886542 to 121886968 426 - pseudogene predicted gene 12587
Gm9631 11 121905745 to 121925328 19583 - protein coding gene predicted gene 9631
Cpgi4351 11 121925120 to 121925304 184 CpG island CpG island 4351
Tssr112472 11 121925314 to 121925343 29 - TSS region transcription start site region 112472
Gm12588 11 121943386 to 121956762 13376 - protein coding gene predicted gene 12588
Tssr112473 11 121956720 to 121956733 13 - TSS region transcription start site region 112473
n-TMcat1 11 121964062 to 121964134 72 - tRNA gene nuclear encoded tRNA methionine 1 (anticodon CAT)
Gm12591 11 121968211 to 121970685 2474 - pseudogene predicted gene 12591