Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120874326-122164341

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Ccdc57 11 120826529 to 120932872 106343 - protein coding gene coiled-coil domain containing 57
Tssr112425 11 120882929 to 120882936 7 - TSS region transcription start site region 112425
Tssr112426 11 120903356 to 120903366 10 - TSS region transcription start site region 112426
Tssr112427 11 120903618 to 120903626 8 - TSS region transcription start site region 112427
Cpgi4332 11 120932526 to 120933182 656 CpG island CpG island 4332
Tssr112428 11 120932832 to 120932876 44 - TSS region transcription start site region 112428
A430102A20Rik 11 120933002 to 120934012 1010 + lncRNA gene RIKEN cDNA A430102A20 gene
Tssr112429 11 120938124 to 120938156 32 - TSS region transcription start site region 112429
Tssr106377 11 120939036 to 120939069 33 + TSS region transcription start site region 106377
Tssr3761 11 120941987 to 120941994 7 - TSS region transcription start site region 3761
Slc16a3 11 120948484 to 120959000 10516 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 3
Cpgi4333 11 120948484 to 120949699 1215 CpG island CpG island 4333
Tssr106378 11 120948493 to 120948533 40 + TSS region transcription start site region 106378
Tssr106379 11 120948543 to 120948553 10 + TSS region transcription start site region 106379
Tssr106380 11 120948714 to 120948746 32 + TSS region transcription start site region 106380
Tssr106381 11 120949100 to 120949114 14 + TSS region transcription start site region 106381
Tssr106382 11 120949516 to 120949519 3 + TSS region transcription start site region 106382
Cpgi4334 11 120950667 to 120951180 513 CpG island CpG island 4334
Tssr106383 11 120955324 to 120955360 36 + TSS region transcription start site region 106383
Tssr106384 11 120956535 to 120956547 12 + TSS region transcription start site region 106384
Tssr106385 11 120958010 to 120958017 7 + TSS region transcription start site region 106385
Tssr106386 11 120958217 to 120958236 19 + TSS region transcription start site region 106386
Tssr106387 11 120958392 to 120958426 34 + TSS region transcription start site region 106387
Csnk1d 11 120961749 to 120991330 29581 - protein coding gene casein kinase 1, delta
Gm28192 11 120963844 to 120964764 920 + antisense lncRNA gene predicted gene 28192
Cpgi4335 11 120990141 to 120991777 1636 CpG island CpG island 4335
Tssr106388 11 120990558 to 120990575 17 + TSS region transcription start site region 106388
Tssr112430 11 120991020 to 120991037 17 - TSS region transcription start site region 112430
Tssr112431 11 120991039 to 120991074 35 - TSS region transcription start site region 112431
Tssr112432 11 120991078 to 120991095 17 - TSS region transcription start site region 112432
Tssr112433 11 120991103 to 120991106 3 - TSS region transcription start site region 112433
Tssr112434 11 120991260 to 120991278 18 - TSS region transcription start site region 112434
Tssr112435 11 120991305 to 120991339 34 - TSS region transcription start site region 112435
Tssr106389 11 120991382 to 120991395 13 + TSS region transcription start site region 106389
Tssr106390 11 120991412 to 120991439 27 + TSS region transcription start site region 106390
Gm30062 11 120991438 to 121015421 23983 + lncRNA gene predicted gene, 30062
D11Mit69.2 11 120996133 to 120996262 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 69.2
D11Mit69 11 120996173 to 120996339 166 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 69
D11Dcr31 11 120996238 to 120996346 108 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 31
Gm11774 11 121003492 to 121003784 292 - pseudogene predicted gene 11774
Cpgi4336 11 121014858 to 121015084 226 CpG island CpG island 4336
Gm22152 11 121030858 to 121030982 124 + snoRNA gene predicted gene, 22152
Cd7 11 121036747 to 121039418 2671 - protein coding gene CD7 antigen
Gm11775 11 121037695 to 121053417 15722 + antisense lncRNA gene predicted gene 11775
Tssr112436 11 121038306 to 121038311 5 - TSS region transcription start site region 112436
Tssr112437 11 121039381 to 121039392 11 - TSS region transcription start site region 112437
Tssr112438 11 121039400 to 121039463 63 - TSS region transcription start site region 112438
Sectm1b 11 121053458 to 121063569 10111 - protein coding gene secreted and transmembrane 1B
Tssr112439 11 121054425 to 121054444 19 - TSS region transcription start site region 112439
Tssr112440 11 121054875 to 121054910 35 - TSS region transcription start site region 112440
Tssr112441 11 121055056 to 121055067 11 - TSS region transcription start site region 112441
Tssr112442 11 121063301 to 121063319 18 - TSS region transcription start site region 112442
Tssr112443 11 121063526 to 121063531 5 - TSS region transcription start site region 112443
Tssr112444 11 121063543 to 121063574 31 - TSS region transcription start site region 112444
Sectm1a 11 121067407 to 121081220 13813 - protein coding gene secreted and transmembrane 1A
Tssr112445 11 121081129 to 121081144 15 - TSS region transcription start site region 112445
Tssr112446 11 121081158 to 121081165 7 - TSS region transcription start site region 112446
Tssr112447 11 121086482 to 121086512 30 - TSS region transcription start site region 112447
Gm11792 11 121092392 to 121092559 167 - pseudogene predicted gene 11792
Gm11791 11 121096641 to 121097207 566 - lincRNA gene predicted gene 11791
D11Dcr42 11 121100608 to 121100703 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 42
D11Dcr43 11 121104069 to 121104164 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 43
Gm11793 11 121106147 to 121107127 980 - pseudogene predicted gene 11793
D11Dcr44 11 121114638 to 121114746 108 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 44
Tex19.2 11 121116215 to 121118677 2462 - protein coding gene testis expressed gene 19.2
Tssr112448 11 121118256 to 121118258 2 - TSS region transcription start site region 112448
Cpgi4337 11 121145940 to 121146137 197 CpG island CpG island 4337
Tex19.1 11 121146143 to 121148314 2171 + protein coding gene testis expressed gene 19.1
Tssr106391 11 121146146 to 121146160 14 + TSS region transcription start site region 106391
Cpgi4338 11 121156309 to 121157179 870 CpG island CpG island 4338
Uts2r 11 121160271 to 121161973 1702 + protein coding gene urotensin 2 receptor
Gm11790 11 121165471 to 121165925 454 - pseudogene predicted gene 11790
Ogfod3 11 121177593 to 121204648 27055 - protein coding gene 2-oxoglutarate and iron-dependent oxygenase domain containing 3
Tssr112449 11 121196352 to 121196355 3 - TSS region transcription start site region 112449
Cpgi4339 11 121204113 to 121205030 917 CpG island CpG island 4339
Tssr106392 11 121204420 to 121204441 21 + TSS region transcription start site region 106392
Hexdc 11 121204433 to 121222655 18222 + protein coding gene hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
Tssr106393 11 121204443 to 121204497 54 + TSS region transcription start site region 106393
Tssr112450 11 121204626 to 121204717 91 - TSS region transcription start site region 112450
Tssr106394 11 121204754 to 121204781 27 + TSS region transcription start site region 106394
Tssr112451 11 121204930 to 121204977 47 - TSS region transcription start site region 112451
Cybc1 11 121222588 to 121229322 6734 - protein coding gene cytochrome b 245 chaperone 1
Cpgi4340 11 121228816 to 121229411 595 CpG island CpG island 4340
Tssr112452 11 121229038 to 121229103 65 - TSS region transcription start site region 112452
Tssr112453 11 121229226 to 121229292 66 - TSS region transcription start site region 112453
Tssr112454 11 121229293 to 121229314 21 - TSS region transcription start site region 112454
Cpgi4341 11 121236482 to 121237602 1120 CpG island CpG island 4341
Tssr106395 11 121237216 to 121237289 73 + TSS region transcription start site region 106395
Narf 11 121237253 to 121255856 18603 + protein coding gene nuclear prelamin A recognition factor
Tssr106396 11 121237305 to 121237317 12 + TSS region transcription start site region 106396
Tssr106397 11 121245363 to 121245407 44 + TSS region transcription start site region 106397
Cpgi4342 11 121259185 to 121261025 1840 CpG island CpG island 4342
Tssr106398 11 121259983 to 121260055 72 + TSS region transcription start site region 106398
Foxk2 11 121259990 to 121309896 49906 + protein coding gene forkhead box K2
Tssr106399 11 121260112 to 121260121 9 + TSS region transcription start site region 106399
Tssr106400 11 121261196 to 121261200 4 + TSS region transcription start site region 106400
Tssr106401 11 121287970 to 121287995 25 + TSS region transcription start site region 106401
Tssr106402 11 121308368 to 121308370 2 + TSS region transcription start site region 106402
Tssr112455 11 121325598 to 121325602 4 - TSS region transcription start site region 112455
Wdr45b 11 121327224 to 121354445 27221 - protein coding gene WD repeat domain 45B
D11Ertd712e 11 121330509 to 121330710 201 DNA segment DNA segment, Chr 11, ERATO Doi 712, expressed
Tssr112456 11 121333573 to 121333577 4 - TSS region transcription start site region 112456
Cpgi4343 11 121353635 to 121354889 1254 CpG island CpG island 4343
Tssr112457 11 121354337 to 121354436 99 - TSS region transcription start site region 112457
Tssr3762 11 121354613 to 121354626 13 + TSS region transcription start site region 3762
Rab40b 11 121356125 to 121388251 32126 - protein coding gene Rab40B, member RAS oncogene family
D11Dcr45 11 121373396 to 121373491 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 45
Mir7236 11 121387145 to 121387204 59 - miRNA gene microRNA 7236
Cpgi4344 11 121387529 to 121388522 993 CpG island CpG island 4344
Tssr112458 11 121388186 to 121388267 81 - TSS region transcription start site region 112458
Gm11866 11 121415092 to 121415426 334 - pseudogene predicted gene 11866
Cpgi4345 11 121421017 to 121421940 923 CpG island CpG island 4345
Tssr106403 11 121421388 to 121421469 81 + TSS region transcription start site region 106403
Fn3krp 11 121421401 to 121431288 9887 + protein coding gene fructosamine 3 kinase related protein
Cpgi4346 11 121434807 to 121435240 433 CpG island CpG island 4346
Fn3k 11 121434913 to 121450491 15578 + protein coding gene fructosamine 3 kinase
Tssr106404 11 121434948 to 121434987 39 + TSS region transcription start site region 106404
Cpgi4347 11 121451728 to 121452580 852 CpG island CpG island 4347
Tbcd 11 121451949 to 121617164 165215 + protein coding gene tubulin-specific chaperone d
Tssr106405 11 121451954 to 121451970 16 + TSS region transcription start site region 106405
Tssr106406 11 121451973 to 121452036 63 + TSS region transcription start site region 106406
D11Mit335 11 121454513 to 121454632 119 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 335
Tssr106407 11 121487963 to 121488004 41 + TSS region transcription start site region 106407
Zfp750 11 121510978 to 121519333 8355 - protein coding gene zinc finger protein 750
Tssr112459 11 121519280 to 121519295 15 - TSS region transcription start site region 112459
Tssr112460 11 121519297 to 121519311 14 - TSS region transcription start site region 112460
Tssr112461 11 121519326 to 121519341 15 - TSS region transcription start site region 112461
Tssr106408 11 121519420 to 121519436 16 + TSS region transcription start site region 106408
Tssr112462 11 121519773 to 121519794 21 - TSS region transcription start site region 112462
Tssr112463 11 121519801 to 121519810 9 - TSS region transcription start site region 112463
Tssr106409 11 121544197 to 121544221 24 + TSS region transcription start site region 106409
Tssr112464 11 121548062 to 121548097 35 - TSS region transcription start site region 112464
Tssr106410 11 121549845 to 121549856 11 + TSS region transcription start site region 106410
Tssr106411 11 121556219 to 121556223 4 + TSS region transcription start site region 106411
Tssr106412 11 121559749 to 121559761 12 + TSS region transcription start site region 106412
Tssr106413 11 121592564 to 121592572 8 + TSS region transcription start site region 106413
Tssr106414 11 121592593 to 121592613 20 + TSS region transcription start site region 106414
Tssr106415 11 121601693 to 121601710 17 + TSS region transcription start site region 106415
B3gntl1 11 121616197 to 121673153 56956 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
Gm18479 11 121663779 to 121664585 806 + pseudogene predicted gene, 18479
Cpgi4348 11 121672660 to 121673593 933 CpG island CpG island 4348
Tssr112465 11 121673069 to 121673102 33 - TSS region transcription start site region 112465
Tssr112466 11 121673103 to 121673146 43 - TSS region transcription start site region 112466
Tssr106416 11 121673448 to 121673464 16 + TSS region transcription start site region 106416
Metrnl 11 121701544 to 121716306 14762 + protein coding gene meteorin, glial cell differentiation regulator-like
Cpgi4349 11 121702045 to 121703752 1707 CpG island CpG island 4349
Tssr106417 11 121702393 to 121702404 11 + TSS region transcription start site region 106417
Tssr106418 11 121702418 to 121702434 16 + TSS region transcription start site region 106418
Tssr106419 11 121702453 to 121702467 14 + TSS region transcription start site region 106419
Tssr106420 11 121702528 to 121702539 11 + TSS region transcription start site region 106420
Tssr106421 11 121702575 to 121702586 11 + TSS region transcription start site region 106421
Tssr106422 11 121702591 to 121702616 25 + TSS region transcription start site region 106422
Tssr106423 11 121702756 to 121702766 10 + TSS region transcription start site region 106423
Tssr112467 11 121703303 to 121703311 8 - TSS region transcription start site region 112467
Tssr106424 11 121706594 to 121706604 10 + TSS region transcription start site region 106424
Tssr106425 11 121708680 to 121708682 2 + TSS region transcription start site region 106425
Tssr106426 11 121717095 to 121717132 37 + TSS region transcription start site region 106426
Tssr106427 11 121717176 to 121717184 8 + TSS region transcription start site region 106427
Tssr106428 11 121717314 to 121717330 16 + TSS region transcription start site region 106428
Tssr106429 11 121718508 to 121718526 18 + TSS region transcription start site region 106429
Tssr106430 11 121718537 to 121718560 23 + TSS region transcription start site region 106430
Tssr106431 11 121718576 to 121718601 25 + TSS region transcription start site region 106431
Tssr112468 11 121741578 to 121741602 24 - TSS region transcription start site region 112468
Tssr112469 11 121744067 to 121744092 25 - TSS region transcription start site region 112469
Tssr112470 11 121745656 to 121745685 29 - TSS region transcription start site region 112470
Tssr106432 11 121748543 to 121748552 9 + TSS region transcription start site region 106432
Gm30338 11 121794930 to 121797346 2416 + lncRNA gene predicted gene, 30338
Gm12589 11 121803107 to 121810319 7212 + lincRNA gene predicted gene 12589
Tssr106433 11 121805486 to 121805490 4 + TSS region transcription start site region 106433
Gm29513 11 121817408 to 121817609 201 + lincRNA gene predicted gene 29513
Gm15643 11 121829446 to 121830103 657 - antisense lncRNA gene predicted gene 15643
Cpgi4350 11 121830078 to 121831069 991 CpG island CpG island 4350
Tssr112471 11 121830141 to 121830150 9 - TSS region transcription start site region 112471
Tssr106434 11 121830193 to 121830198 5 + TSS region transcription start site region 106434
Tssr106435 11 121830215 to 121830224 9 + TSS region transcription start site region 106435
Tssr106436 11 121830231 to 121830250 19 + TSS region transcription start site region 106436
Ptchd3 11 121830247 to 121843423 13176 + protein coding gene patched domain containing 3
Tssr106437 11 121830254 to 121830279 25 + TSS region transcription start site region 106437
Tssr106438 11 121847034 to 121847038 4 + TSS region transcription start site region 106438
Gm12586 11 121856704 to 121858792 2088 + pseudogene predicted gene 12586
D11Mit1007 11 121870088 to 121870246 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1007
Gm12590 11 121882333 to 121883863 1530 - lincRNA gene predicted gene 12590
Gm12587 11 121886542 to 121886968 426 - pseudogene predicted gene 12587
Gm9631 11 121905745 to 121925328 19583 - protein coding gene predicted gene 9631
Cpgi4351 11 121925120 to 121925304 184 CpG island CpG island 4351
Tssr112472 11 121925314 to 121925343 29 - TSS region transcription start site region 112472
Gm12588 11 121943386 to 121956762 13376 - protein coding gene predicted gene 12588
Tssr112473 11 121956720 to 121956733 13 - TSS region transcription start site region 112473
n-TMcat1 11 121964062 to 121964134 72 - tRNA gene nuclear encoded tRNA methionine 1 (anticodon CAT)
Gm12591 11 121968211 to 121970685 2474 - pseudogene predicted gene 12591